Variant report

Variant	rs9655777
Chromosome Location	chr7:103801803-103801804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103801114..103802844-chr7:103807338..103808985,2	K562	blood:
2	chr7:103801472..103803128-chr7:103806675..103808623,2	K562	blood:
3	chr7:103309641..103312329-chr7:103801017..103803175,2	K562	blood:
4	chr7:103628784..103631048-chr7:103800066..103802950,2	K562	blood:
5	chr7:103629548..103631845-chr7:103800159..103802950,2	K562	blood:
6	chr7:103794161..103796658-chr7:103800884..103802948,2	K562	blood:

Variant related genes	Relation type
ENSG00000189056	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10155973	0.82[AFR][1000 genomes]
rs1019312	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10234499	1.00[EUR][1000 genomes]
rs10235130	1.00[EUR][1000 genomes]
rs10235201	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10241191	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10242752	0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10249033	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250235	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10251308	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10251561	1.00[EUR][1000 genomes]
rs10251976	0.84[AFR][1000 genomes]
rs10255806	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256764	1.00[EUR][1000 genomes]
rs10258773	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10260238	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10262560	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262796	0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262996	0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263828	1.00[EUR][1000 genomes]
rs10266337	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267412	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267940	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268209	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270562	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10271923	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10275484	1.00[EUR][1000 genomes]
rs10275705	0.82[AFR][1000 genomes]
rs10276243	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10277637	0.89[YRI][hapmap]
rs10278320	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10279736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10281709	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10282300	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10487184	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10487192	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11489610	0.95[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11972422	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11979390	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11979993	0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11980018	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12112576	1.00[EUR][1000 genomes]
rs16873387	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17158586	1.00[EUR][1000 genomes]
rs17159290	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17159774	1.00[EUR][1000 genomes]
rs2307409	1.00[EUR][1000 genomes]
rs2385134	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28481813	1.00[EUR][1000 genomes]
rs28644319	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28645598	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28686914	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28702500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28773535	1.00[EUR][1000 genomes]
rs28820003	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs3779515	0.86[YRI][hapmap]
rs3779516	0.86[YRI][hapmap]
rs58842751	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59750244	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6948021	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6949887	0.95[YRI][hapmap];0.87[AFR][1000 genomes]
rs6954109	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6962621	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6967711	1.00[EUR][1000 genomes]
rs6975642	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73413894	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415704	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73415717	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73415730	1.00[EUR][1000 genomes]
rs73415786	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415801	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417705	1.00[EUR][1000 genomes]
rs73417718	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7777446	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7777906	0.95[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7810496	1.00[EUR][1000 genomes]
rs9656090	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:103765600-103815000	Weak transcription	Brain Angular Gyrus	brain
5	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
6	chr7:103766200-103803800	Weak transcription	Pancreas	Pancrea
7	chr7:103766200-103816000	Weak transcription	Brain Substantia Nigra	brain
8	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
9	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
10	chr7:103766400-103822600	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:103767200-103829200	Weak transcription	Gastric	stomach
12	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
13	chr7:103767600-103820200	Weak transcription	Brain Germinal Matrix	brain
14	chr7:103769200-103822600	Weak transcription	Fetal Kidney	kidney
15	chr7:103771800-103804400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:103771800-103807200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:103771800-103820000	Weak transcription	NHEK	skin
18	chr7:103773200-103822800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr7:103774600-103803600	Weak transcription	Ovary	ovary
20	chr7:103774800-103802800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:103775200-103829200	Weak transcription	Lung	lung
22	chr7:103775400-103803400	Weak transcription	Left Ventricle	heart
23	chr7:103775800-103803800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr7:103776800-103803800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr7:103776800-103820200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr7:103776800-103822800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr7:103777000-103803000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr7:103777000-103803800	Weak transcription	Brain Hippocampus Middle	brain
29	chr7:103777000-103804600	Weak transcription	Colonic Mucosa	Colon
30	chr7:103777000-103804800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr7:103777000-103805200	Weak transcription	Placenta	Placenta
32	chr7:103777000-103819600	Weak transcription	Fetal Brain Female	brain
33	chr7:103777200-103805000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:103777200-103819400	Weak transcription	GM12878-XiMat	blood
35	chr7:103777400-103803400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr7:103777400-103805000	Weak transcription	HMEC	breast
37	chr7:103777400-103819800	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr7:103778200-103802800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:103778200-103802800	Weak transcription	Adipose Nuclei	Adipose
40	chr7:103778200-103803600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr7:103778200-103803600	Weak transcription	Thymus	Thymus
42	chr7:103778400-103802600	Weak transcription	Fetal Intestine Large	intestine
43	chr7:103778600-103802600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr7:103778800-103803600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr7:103778800-103804600	Weak transcription	Osteobl	bone
46	chr7:103779000-103802800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr7:103779000-103806800	Weak transcription	NH-A	brain
48	chr7:103779200-103802600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:103779200-103803600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr7:103779200-103811600	Weak transcription	NHDF-Ad	bronchial

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