Variant report
| Variant | rs9656503 |
|---|---|
| Chromosome Location | chr7:137729533-137729534 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000231923 | TF binding region |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10232506 | 1.00[AMR][1000 genomes] |
| rs10235317 | 1.00[AMR][1000 genomes] |
| rs10236609 | 1.00[AMR][1000 genomes] |
| rs10242671 | 1.00[AMR][1000 genomes] |
| rs10249301 | 1.00[AMR][1000 genomes] |
| rs10250005 | 1.00[AMR][1000 genomes] |
| rs10258577 | 1.00[AMR][1000 genomes] |
| rs10264216 | 1.00[AMR][1000 genomes] |
| rs10266425 | 1.00[AMR][1000 genomes] |
| rs10266565 | 1.00[AMR][1000 genomes] |
| rs10268709 | 1.00[AMR][1000 genomes] |
| rs10276142 | 1.00[AMR][1000 genomes] |
| rs10279427 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs10281914 | 1.00[AMR][1000 genomes] |
| rs13362852 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs28675865 | 1.00[AMR][1000 genomes] |
| rs28687061 | 1.00[AMR][1000 genomes] |
| rs28691233 | 1.00[AMR][1000 genomes] |
| rs28735498 | 1.00[AMR][1000 genomes] |
| rs28841352 | 1.00[AMR][1000 genomes] |
| rs73732228 | 1.00[AMR][1000 genomes] |
| rs73732229 | 1.00[AMR][1000 genomes] |
| rs7810602 | 1.00[AMR][1000 genomes] |
| rs9655904 | 1.00[AMR][1000 genomes] |
| rs9692029 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv518070 | chr7:137534627-137808839 | Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv831151 | chr7:137711447-137865471 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | esv34048 | chr7:137724092-138213119 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 35 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:137729200-137729800 | Weak transcription | Liver | Liver |
