Variant report

Variant	rs965984
Chromosome Location	chr17:34174507-34174508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34168000..34172088-chr17:34173812..34175536,3	K562	blood:
2	chr17:34174331..34176212-chr17:34179934..34181767,2	K562	blood:

Variant related genes	Relation type
ENSG00000172660	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1065341	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963927	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971570	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971585	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971600	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971620	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971624	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2735479	0.90[EUR][1000 genomes]
rs2735482	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2735483	0.90[EUR][1000 genomes]
rs28912069	0.95[EUR][1000 genomes]
rs28914812	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28914818	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4251744	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4251776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59536691	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61590868	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7209512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224965	0.92[EUR][1000 genomes]
rs8073456	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9674851	1.00[CEU][hapmap]
rs9895464	1.00[CEU][hapmap]
rs9898128	1.00[CEU][hapmap]
rs9914929	1.00[CEU][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34138600-34180800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:34138800-34184000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr17:34139200-34184200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr17:34139400-34177600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr17:34141600-34177400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr17:34142000-34175800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr17:34142000-34177600	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr17:34142400-34177600	Strong transcription	Fetal Thymus	thymus
9	chr17:34142400-34178200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr17:34142600-34175600	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr17:34142600-34177400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr17:34142600-34180400	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr17:34142800-34178600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr17:34142800-34180800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr17:34142800-34181000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr17:34143000-34174800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr17:34143000-34177400	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr17:34143000-34177400	Strong transcription	Primary B cells from peripheral blood	blood
19	chr17:34144000-34175600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr17:34144000-34180000	Strong transcription	HSMM	muscle
21	chr17:34144800-34175800	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr17:34144800-34178600	Strong transcription	Adipose Nuclei	Adipose
23	chr17:34145000-34177600	Strong transcription	Dnd41	blood
24	chr17:34145200-34177400	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr17:34145800-34175600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr17:34145800-34176400	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr17:34145800-34176400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr17:34146000-34176400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr17:34146400-34177600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr17:34146600-34176400	Strong transcription	HUVEC	blood vessel
31	chr17:34147000-34175600	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr17:34147800-34177800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr17:34148200-34178800	Strong transcription	Fetal Muscle Trunk	muscle
34	chr17:34152600-34178800	Weak transcription	Fetal Heart	heart
35	chr17:34154400-34176800	Strong transcription	Fetal Brain Female	brain
36	chr17:34156600-34177400	Strong transcription	Primary B cells from cord blood	blood
37	chr17:34157000-34175200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr17:34158000-34180400	Strong transcription	A549	lung
39	chr17:34158400-34180200	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr17:34159200-34177400	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr17:34159800-34175000	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr17:34159800-34177400	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr17:34160200-34176200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr17:34160600-34177600	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr17:34160600-34177800	Strong transcription	Placenta	Placenta
46	chr17:34160800-34180200	Strong transcription	Fetal Muscle Leg	muscle
47	chr17:34161200-34175200	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr17:34161800-34175400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr17:34161800-34186200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr17:34162000-34175400	Strong transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links