Variant report

Variant	rs9663018
Chromosome Location	chr1:225315821-225315822
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10915779	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10915782	0.84[ASN][1000 genomes]
rs10915783	0.84[ASN][1000 genomes]
rs10915784	0.85[ASN][1000 genomes]
rs10915787	0.84[ASN][1000 genomes]
rs11588063	0.81[ASN][1000 genomes]
rs12067806	0.86[ASN][1000 genomes]
rs12075556	0.80[ASN][1000 genomes]
rs12080027	0.84[ASN][1000 genomes]
rs12562045	0.80[ASN][1000 genomes]
rs12565737	0.83[ASN][1000 genomes]
rs12565929	0.84[ASN][1000 genomes]
rs1506069	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1506071	0.81[ASN][1000 genomes]
rs1600531	0.84[ASN][1000 genomes]
rs1832540	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1842331	0.84[ASN][1000 genomes]
rs1847908	0.81[ASN][1000 genomes]
rs1847909	0.81[ASN][1000 genomes]
rs2128268	0.81[ASN][1000 genomes]
rs2170109	0.81[ASN][1000 genomes]
rs2405701	0.91[ASN][1000 genomes]
rs2405702	0.85[ASN][1000 genomes]
rs2449256	0.81[ASN][1000 genomes]
rs2449258	0.81[ASN][1000 genomes]
rs2449287	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2449304	0.81[ASN][1000 genomes]
rs2456336	0.82[ASN][1000 genomes]
rs2456349	0.82[ASN][1000 genomes]
rs2489298	0.81[ASN][1000 genomes]
rs2489327	0.81[ASN][1000 genomes]
rs2489337	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2489343	0.81[ASN][1000 genomes]
rs2489346	0.81[ASN][1000 genomes]
rs2489348	0.81[ASN][1000 genomes]
rs2489352	0.81[ASN][1000 genomes]
rs2501100	0.81[ASN][1000 genomes]
rs2501101	0.81[ASN][1000 genomes]
rs2501110	0.83[ASN][1000 genomes]
rs2929626	0.83[ASN][1000 genomes]
rs2939363	0.82[ASN][1000 genomes]
rs3101904	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3101906	0.81[ASN][1000 genomes]
rs3101909	0.81[ASN][1000 genomes]
rs3101910	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3101914	0.83[ASN][1000 genomes]
rs3101916	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3101917	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3102106	0.81[ASN][1000 genomes]
rs3102108	0.81[ASN][1000 genomes]
rs3102110	0.81[ASN][1000 genomes]
rs3102112	0.81[ASN][1000 genomes]
rs3102113	0.81[ASN][1000 genomes]
rs3102115	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3102116	0.81[ASN][1000 genomes]
rs3105551	0.81[ASN][1000 genomes]
rs3105552	0.81[ASN][1000 genomes]
rs3105553	0.81[ASN][1000 genomes]
rs3105554	0.81[ASN][1000 genomes]
rs3105556	0.81[ASN][1000 genomes]
rs3105558	0.81[ASN][1000 genomes]
rs3105559	0.81[ASN][1000 genomes]
rs3105562	0.80[ASN][1000 genomes]
rs3105563	0.80[ASN][1000 genomes]
rs3105564	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3105565	0.81[ASN][1000 genomes]
rs3105566	0.81[ASN][1000 genomes]
rs3105567	0.81[ASN][1000 genomes]
rs3105568	0.81[ASN][1000 genomes]
rs3105569	0.81[ASN][1000 genomes]
rs3105572	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3120987	0.84[ASN][1000 genomes]
rs3120989	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3120990	0.81[ASN][1000 genomes]
rs3120991	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3120993	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3128643	0.81[ASN][1000 genomes]
rs3128644	0.81[ASN][1000 genomes]
rs3128646	0.81[ASN][1000 genomes]
rs3128649	0.81[ASN][1000 genomes]
rs3128650	0.81[ASN][1000 genomes]
rs3128654	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3128655	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3128657	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3128658	0.81[ASN][1000 genomes]
rs3128660	0.81[ASN][1000 genomes]
rs3128664	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3128666	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3128667	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3128675	0.84[ASN][1000 genomes]
rs3128676	0.84[ASN][1000 genomes]
rs55764147	0.84[ASN][1000 genomes]
rs56088855	0.81[ASN][1000 genomes]
rs61041116	0.84[ASN][1000 genomes]
rs61211002	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61849768	0.81[ASN][1000 genomes]
rs6674717	0.83[ASN][1000 genomes]
rs6683938	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6686694	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6697382	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7521702	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7545060	0.84[ASN][1000 genomes]
rs7548138	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs769296	0.83[ASN][1000 genomes]
rs9919209	0.83[ASN][1000 genomes]
rs995613	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv524461	chr1:225304331-225347689	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv468205	chr1:225304971-225476025	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv549264	chr1:225304971-225476025	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225301800-225355800	Weak transcription	Pancreas	Pancrea

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