Variant report

Variant	rs966677
Chromosome Location	chr4:175449851-175449852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175442694..175445329-chr4:175449506..175451316,2	K562	blood:
2	chr4:175446532..175448494-chr4:175449154..175453530,3	K562	blood:

Variant related genes	Relation type
ENSG00000164120	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10520280	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11725947	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726110	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11729325	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1365618	1.00[ASN][1000 genomes]
rs17295290	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17361254	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17362066	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2256673	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332877	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2555637	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113885	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35138844	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv880884	chr4:175439056-175453830	Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175445000-175452800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:175445000-175453600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:175445000-175457600	Weak transcription	Placenta	Placenta
4	chr4:175446200-175452200	Weak transcription	Fetal Intestine Small	intestine
5	chr4:175446400-175450200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:175447000-175453000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:175447000-175453000	Weak transcription	Small Intestine	intestine
8	chr4:175447000-175459000	Weak transcription	A549	lung
9	chr4:175447200-175459200	Weak transcription	Stomach Mucosa	stomach
10	chr4:175447400-175452200	Weak transcription	Fetal Intestine Large	intestine
11	chr4:175449000-175450000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr4:175449000-175450000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr4:175449000-175450000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:175449600-175452600	Weak transcription	K562	blood
15	chr4:175449600-175452800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr4:175449600-175452800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:175449600-175453000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:175449600-175453200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr4:175449800-175452200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:175449800-175452800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr4:175449800-175460000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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