Variant report

Variant	rs9667108
Chromosome Location	chr11:46935185-46935186
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46933810..46936759-chr11:46937673..46939969,2	MCF-7	breast:
2	chr11:46935034..46937537-chr11:47198263..47201001,2	K562	blood:

Variant related genes	Relation type
ENSG00000165912	Chromatin interaction
ENSG00000149182	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10466476	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466477	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838634	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038985	1.00[ASN][1000 genomes]
rs11038987	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039012	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039015	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607429	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822959	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824327	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825434	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273360	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277006	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281784	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287376	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294921	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938534	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787930	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867206	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136433	1.00[ASN][1000 genomes]
rs3136434	1.00[ASN][1000 genomes]
rs3136436	1.00[ASN][1000 genomes]
rs3136439	1.00[ASN][1000 genomes]
rs3136443	1.00[ASN][1000 genomes]
rs3136446	1.00[ASN][1000 genomes]
rs3136448	1.00[ASN][1000 genomes]
rs3136467	1.00[ASN][1000 genomes]
rs3136468	1.00[ASN][1000 genomes]
rs3136469	1.00[ASN][1000 genomes]
rs3136472	1.00[ASN][1000 genomes]
rs3136480	1.00[ASN][1000 genomes]
rs3136481	1.00[ASN][1000 genomes]
rs3136482	1.00[ASN][1000 genomes]
rs3136489	1.00[ASN][1000 genomes]
rs3136500	1.00[ASN][1000 genomes]
rs3136504	1.00[ASN][1000 genomes]
rs3136521	1.00[ASN][1000 genomes]
rs4128315	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4463814	1.00[ASN][1000 genomes]
rs4500447	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311746	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56331152	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57368576	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57485117	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5898	1.00[ASN][1000 genomes]
rs59197251	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60940896	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61382645	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884294	1.00[ASN][1000 genomes]
rs61884297	1.00[ASN][1000 genomes]
rs61884303	1.00[ASN][1000 genomes]
rs61884304	1.00[ASN][1000 genomes]
rs61884305	1.00[ASN][1000 genomes]
rs61884306	1.00[ASN][1000 genomes]
rs61884307	1.00[ASN][1000 genomes]
rs61896127	1.00[ASN][1000 genomes]
rs61897302	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897303	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897304	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897308	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898529	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898531	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899280	1.00[ASN][1000 genomes]
rs61899282	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899283	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899292	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485700	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485706	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102325	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102474	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105052	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105172	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105217	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106323	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107703	0.83[EUR][1000 genomes]
rs7108147	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111760	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111811	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112060	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112518	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115986	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118097	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123729	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128102	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129622	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73456126	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928445	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938960	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945548	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947517	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735937	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46921600-46936000	Weak transcription	Pancreas	Pancrea
2	chr11:46921600-46936000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:46921800-46938400	Weak transcription	Gastric	stomach
4	chr11:46928600-46937200	Weak transcription	HepG2	liver
5	chr11:46932800-46937000	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:46933600-46935600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:46933600-46935600	Enhancers	Fetal Heart	heart
8	chr11:46933600-46939000	Enhancers	Spleen	Spleen
9	chr11:46933800-46935200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:46933800-46935200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:46933800-46935400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr11:46933800-46935800	Enhancers	Fetal Kidney	kidney
13	chr11:46933800-46936200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr11:46933800-46937000	Enhancers	Brain Substantia Nigra	brain
15	chr11:46933800-46937000	Enhancers	Fetal Lung	lung
16	chr11:46933800-46937000	Enhancers	HSMMtube	muscle
17	chr11:46934000-46935200	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr11:46934000-46935200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:46934000-46935200	Flanking Active TSS	Brain Germinal Matrix	brain
20	chr11:46934000-46935200	Bivalent Enhancer	Fetal Muscle Leg	muscle
21	chr11:46934000-46935400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:46934000-46935400	Enhancers	Right Ventricle	heart
23	chr11:46934000-46935800	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr11:46934000-46936200	Bivalent Enhancer	Fetal Thymus	thymus
25	chr11:46934000-46936400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:46934000-46936600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:46934000-46936800	Enhancers	Duodenum Mucosa	Duodenum
28	chr11:46934000-46936800	Enhancers	HSMM	muscle
29	chr11:46934000-46936800	Enhancers	NHLF	lung
30	chr11:46934000-46938200	Enhancers	Left Ventricle	heart
31	chr11:46934200-46935400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
32	chr11:46934200-46935400	Flanking Active TSS	Fetal Brain Female	brain
33	chr11:46934200-46935800	Enhancers	NHDF-Ad	bronchial
34	chr11:46934200-46936400	Enhancers	Stomach Mucosa	stomach
35	chr11:46934400-46935400	Weak transcription	Colon Smooth Muscle	Colon
36	chr11:46934400-46936800	Enhancers	Muscle Satellite Cultured Cells	--
37	chr11:46934400-46937800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:46934400-46938000	Enhancers	Fetal Stomach	stomach
39	chr11:46934400-46938000	Weak transcription	A549	lung
40	chr11:46934400-46939000	Weak transcription	Hela-S3	cervix
41	chr11:46934600-46935200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:46934600-46935200	Enhancers	Fetal Muscle Trunk	muscle
43	chr11:46934600-46935400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr11:46934600-46935600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr11:46934600-46936000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr11:46934600-46936200	Enhancers	Brain Angular Gyrus	brain
47	chr11:46934600-46936400	Enhancers	NH-A	brain
48	chr11:46934600-46936800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:46934600-46936800	Enhancers	HMEC	breast
50	chr11:46934600-46937800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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