Variant report

Variant	rs966953
Chromosome Location	chr6:102429203-102429204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:102427557..102429881-chr6:102433659..102436642,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1223042	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1310715	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs13190892	0.94[ASN][1000 genomes]
rs13191478	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs13191957	0.93[ASN][1000 genomes]
rs13195038	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs13197158	0.93[ASN][1000 genomes]
rs13197283	0.93[ASN][1000 genomes]
rs13199079	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs13200524	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs13201987	0.92[ASN][1000 genomes]
rs13203019	0.92[ASN][1000 genomes]
rs13203156	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs13208276	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs13210850	0.93[ASN][1000 genomes]
rs13210976	0.93[ASN][1000 genomes]
rs13211215	0.93[ASN][1000 genomes]
rs13215171	0.87[ASN][1000 genomes]
rs13216974	0.94[ASN][1000 genomes]
rs13218403	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1335022	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1335024	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1335031	0.83[CHB][hapmap]
rs1335033	0.82[CHB][hapmap]
rs2023599	0.83[CHB][hapmap]
rs2399584	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2518146	0.80[CHB][hapmap]
rs2518148	0.82[CHB][hapmap]
rs2782908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2782929	0.85[CHB][hapmap]
rs2852607	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2852608	0.82[CHB][hapmap]
rs35306110	0.93[ASN][1000 genomes]
rs35697470	0.93[ASN][1000 genomes]
rs62423079	0.94[ASN][1000 genomes]
rs62423081	0.94[ASN][1000 genomes]
rs62423082	0.94[ASN][1000 genomes]
rs66829771	0.95[ASN][1000 genomes]
rs67501069	0.94[ASN][1000 genomes]
rs7738614	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs7749722	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7756449	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9485585	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs9498801	0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs995640	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1033919	chr6:102417713-102474539	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2756012	chr6:102428797-102489159	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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