Variant report

Variant	rs9671129
Chromosome Location	chr13:96144495-96144496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16951257	1.00[EUR][1000 genomes]
rs17882446	1.00[EUR][1000 genomes]
rs2389266	1.00[EUR][1000 genomes]
rs34303958	1.00[EUR][1000 genomes]
rs4394949	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55649836	1.00[EUR][1000 genomes]
rs55671956	1.00[EUR][1000 genomes]
rs56397503	1.00[EUR][1000 genomes]
rs58386476	1.00[EUR][1000 genomes]
rs61645359	1.00[EUR][1000 genomes]
rs7323853	1.00[EUR][1000 genomes]
rs74106020	1.00[EUR][1000 genomes]
rs74106197	1.00[EUR][1000 genomes]
rs74106202	1.00[EUR][1000 genomes]
rs74109004	1.00[EUR][1000 genomes]
rs74109005	1.00[EUR][1000 genomes]
rs74109006	1.00[EUR][1000 genomes]
rs74109007	1.00[EUR][1000 genomes]
rs74109010	1.00[EUR][1000 genomes]
rs74109011	1.00[EUR][1000 genomes]
rs74109012	1.00[EUR][1000 genomes]
rs74109013	1.00[EUR][1000 genomes]
rs74109014	1.00[EUR][1000 genomes]
rs74109015	1.00[EUR][1000 genomes]
rs74109016	1.00[EUR][1000 genomes]
rs74109017	1.00[EUR][1000 genomes]
rs74109018	1.00[EUR][1000 genomes]
rs74109019	1.00[EUR][1000 genomes]
rs74109020	1.00[EUR][1000 genomes]
rs74109021	1.00[EUR][1000 genomes]
rs74109022	1.00[EUR][1000 genomes]
rs7984248	1.00[EUR][1000 genomes]
rs7990355	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043019	chr13:95924585-96152616	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1037673	chr13:95930191-96146554	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541882	chr13:95930191-96146554	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2752652	chr13:96059024-96181597	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96127800-96144600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:96143800-96145400	Enhancers	Stomach Mucosa	stomach
3	chr13:96144200-96144600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:96144200-96145000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr13:96144200-96145000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:96144200-96145000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr13:96144200-96145000	Enhancers	HMEC	breast
8	chr13:96144200-96145400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr13:96144400-96145000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links