Variant report

Variant	rs9671165
Chromosome Location	chr13:96145075-96145076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs17878352	1.00[AMR][1000 genomes]
rs17878602	1.00[AMR][1000 genomes]
rs17878616	1.00[AMR][1000 genomes]
rs17879147	1.00[AMR][1000 genomes]
rs17879910	1.00[AMR][1000 genomes]
rs17882010	1.00[AMR][1000 genomes]
rs17882236	1.00[AMR][1000 genomes]
rs17884692	1.00[AMR][1000 genomes]
rs17885200	1.00[AMR][1000 genomes]
rs17885366	1.00[AMR][1000 genomes]
rs17886542	1.00[AMR][1000 genomes]
rs3887326	1.00[AMR][1000 genomes]
rs56821033	1.00[AMR][1000 genomes]
rs57025821	1.00[AMR][1000 genomes]
rs58500800	1.00[AMR][1000 genomes]
rs58832724	1.00[AMR][1000 genomes]
rs59610853	1.00[AMR][1000 genomes]
rs61330532	1.00[AMR][1000 genomes]
rs7319355	1.00[AMR][1000 genomes]
rs7337773	1.00[AMR][1000 genomes]
rs73548787	1.00[AMR][1000 genomes]
rs73548796	1.00[AMR][1000 genomes]
rs73548798	1.00[AMR][1000 genomes]
rs73550505	1.00[AMR][1000 genomes]
rs73550507	1.00[AMR][1000 genomes]
rs73550511	1.00[AMR][1000 genomes]
rs73550512	1.00[AMR][1000 genomes]
rs73550513	1.00[AMR][1000 genomes]
rs73550515	1.00[AMR][1000 genomes]
rs73550518	1.00[AMR][1000 genomes]
rs73550523	1.00[AMR][1000 genomes]
rs73550529	1.00[AMR][1000 genomes]
rs73550530	1.00[AMR][1000 genomes]
rs73550533	1.00[AMR][1000 genomes]
rs73550534	1.00[AMR][1000 genomes]
rs73550539	1.00[AMR][1000 genomes]
rs73550545	1.00[AMR][1000 genomes]
rs73550547	1.00[AMR][1000 genomes]
rs73550548	1.00[AMR][1000 genomes]
rs73550551	1.00[AMR][1000 genomes]
rs73550552	1.00[AMR][1000 genomes]
rs73550554	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043019	chr13:95924585-96152616	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1037673	chr13:95930191-96146554	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541882	chr13:95930191-96146554	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2752652	chr13:96059024-96181597	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96143800-96145400	Enhancers	Stomach Mucosa	stomach
2	chr13:96144200-96145400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr13:96144600-96145200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
4	chr13:96144600-96145200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr13:96144600-96145200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:96144600-96145400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr13:96144600-96145600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:96144800-96145200	Enhancers	Duodenum Mucosa	Duodenum
9	chr13:96144800-96145400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr13:96145000-96152600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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