Variant report

Variant	rs9672189
Chromosome Location	chr15:78801396-78801397
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:78800239..78802096-chr15:78806639..78809897,3	K562	blood:
2	chr15:78800463..78801974-chr15:78805199..78807049,2	MCF-7	breast:
3	chr15:78798632..78802030-chr15:78802831..78805742,4	K562	blood:
4	chr15:78798632..78801641-chr15:78802047..78805742,4	K562	blood:
5	chr15:78797464..78804546-chr15:78829529..78835433,12	MCF-7	breast:
6	chr15:78799175..78801434-chr15:78856957..78860049,3	K562	blood:
7	chr15:78800242..78802455-chr15:78857304..78859272,2	MCF-7	breast:
8	chr15:78799968..78802208-chr15:78803211..78805920,2	MCF-7	breast:
9	chr15:78791030..78793547-chr15:78800208..78802171,2	MCF-7	breast:
10	chr15:78798048..78801609-chr15:78828919..78833228,5	K562	blood:
11	chr15:78798844..78801827-chr15:78830907..78834394,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000268838	Chromatin interaction
ENSG00000188266	Chromatin interaction
ENSG00000169684	Chromatin interaction
ENSG00000041357	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11854548	0.94[AFR][1000 genomes]
rs16969922	0.95[AFR][1000 genomes]
rs56928863	0.95[AFR][1000 genomes]
rs56976898	0.94[AFR][1000 genomes]
rs61545548	0.88[AFR][1000 genomes]
rs73463030	0.91[AFR][1000 genomes]
rs73463038	0.86[AFR][1000 genomes]
rs73463040	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1038816	chr15:78796434-78881087	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78800400-78812200	Weak transcription	Lung	lung
2	chr15:78800600-78813600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:78800600-78822200	Weak transcription	Pancreas	Pancrea
4	chr15:78800600-78823600	Weak transcription	Gastric	stomach
5	chr15:78800800-78801400	Active TSS	Duodenum Mucosa	Duodenum
6	chr15:78800800-78801800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:78800800-78802000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr15:78800800-78802000	Weak transcription	GM12878-XiMat	blood
9	chr15:78800800-78802200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr15:78800800-78802600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr15:78800800-78802800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr15:78800800-78806600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:78800800-78807400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:78800800-78807600	Weak transcription	Fetal Stomach	stomach
15	chr15:78800800-78810200	Weak transcription	Aorta	Aorta
16	chr15:78800800-78812000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr15:78800800-78813800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:78800800-78816400	Weak transcription	Ovary	ovary
19	chr15:78800800-78820800	Weak transcription	Psoas Muscle	Psoas
20	chr15:78800800-78823400	Weak transcription	Colon Smooth Muscle	Colon
21	chr15:78800800-78825600	Weak transcription	Brain Angular Gyrus	brain
22	chr15:78800800-78830800	Weak transcription	Right Ventricle	heart
23	chr15:78800800-78832000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:78800800-78832200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:78800800-78832200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:78800800-78832400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr15:78801000-78801400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr15:78801000-78801400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr15:78801000-78801400	Enhancers	Fetal Intestine Small	intestine
30	chr15:78801000-78801600	Enhancers	Primary T cells from cord blood	blood
31	chr15:78801000-78802000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:78801000-78805600	Weak transcription	Left Ventricle	heart
33	chr15:78801000-78809600	Weak transcription	Liver	Liver
34	chr15:78801000-78810000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:78801000-78810400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr15:78801000-78812800	Weak transcription	Brain Anterior Caudate	brain
37	chr15:78801000-78813400	Weak transcription	Brain Hippocampus Middle	brain
38	chr15:78801000-78813600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr15:78801000-78817800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr15:78801000-78818200	Weak transcription	Colonic Mucosa	Colon
41	chr15:78801000-78825600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr15:78801000-78829600	Weak transcription	Fetal Muscle Leg	muscle
43	chr15:78801000-78832200	Weak transcription	Adipose Nuclei	Adipose
44	chr15:78801000-78832200	Weak transcription	Fetal Kidney	kidney
45	chr15:78801000-78832200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr15:78801000-78832200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr15:78801000-78832200	Weak transcription	A549	lung
48	chr15:78801200-78801600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:78801200-78802400	Enhancers	HepG2	liver
50	chr15:78801200-78806800	Weak transcription	Fetal Intestine Large	intestine

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