Variant report

Variant	rs9672952
Chromosome Location	chr15:76251531-76251532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1532783	0.82[AFR][1000 genomes]
rs2133409	1.00[AFR][1000 genomes]
rs4489969	0.81[AFR][1000 genomes]
rs55665712	0.86[AFR][1000 genomes]
rs55719276	0.86[AFR][1000 genomes]
rs55782145	0.82[AFR][1000 genomes]
rs55828994	0.86[AFR][1000 genomes]
rs56173902	0.86[AFR][1000 genomes]
rs57011816	0.86[AFR][1000 genomes]
rs57127155	0.91[AFR][1000 genomes]
rs57141410	0.80[AFR][1000 genomes]
rs57968453	0.84[AFR][1000 genomes]
rs57971067	0.84[AFR][1000 genomes]
rs57973358	0.86[AFR][1000 genomes]
rs58044283	1.00[AFR][1000 genomes]
rs58399164	1.00[AFR][1000 genomes]
rs58717562	0.84[AFR][1000 genomes]
rs58789594	0.95[AFR][1000 genomes]
rs59690620	0.86[AFR][1000 genomes]
rs59819402	0.93[AFR][1000 genomes]
rs59839117	0.95[AFR][1000 genomes]
rs60088262	0.84[AFR][1000 genomes]
rs60155009	0.86[AFR][1000 genomes]
rs60191258	0.86[AFR][1000 genomes]
rs61240117	0.84[AFR][1000 genomes]
rs61521312	1.00[AFR][1000 genomes]
rs7173697	0.86[AFR][1000 genomes]
rs7174280	0.84[AFR][1000 genomes]
rs7174365	0.86[AFR][1000 genomes]
rs7181550	0.84[AFR][1000 genomes]
rs7182720	0.91[AFR][1000 genomes]
rs74024009	0.84[AFR][1000 genomes]
rs74024014	0.84[AFR][1000 genomes]
rs74024019	0.86[AFR][1000 genomes]
rs74024021	0.86[AFR][1000 genomes]
rs74024022	0.86[AFR][1000 genomes]
rs74024023	0.86[AFR][1000 genomes]
rs74024028	0.95[AFR][1000 genomes]
rs74024030	1.00[AFR][1000 genomes]
rs74024032	1.00[AFR][1000 genomes]
rs74024035	1.00[AFR][1000 genomes]
rs74024040	1.00[AFR][1000 genomes]
rs74024041	1.00[AFR][1000 genomes]
rs74024042	1.00[AFR][1000 genomes]
rs74024044	1.00[AFR][1000 genomes]
rs74024045	1.00[AFR][1000 genomes]
rs74024047	1.00[AFR][1000 genomes]
rs74024048	1.00[AFR][1000 genomes]
rs74024049	0.86[AFR][1000 genomes]
rs74024051	1.00[AFR][1000 genomes]
rs74024052	1.00[AFR][1000 genomes]
rs74024053	1.00[AFR][1000 genomes]
rs74024059	0.86[AFR][1000 genomes]
rs74024060	0.86[AFR][1000 genomes]
rs74024063	0.84[AFR][1000 genomes]
rs74024064	0.84[AFR][1000 genomes]
rs74024065	0.84[AFR][1000 genomes]
rs74024071	0.84[AFR][1000 genomes]
rs74024073	0.84[AFR][1000 genomes]
rs8025372	0.86[AFR][1000 genomes]
rs8028084	0.84[AFR][1000 genomes]
rs8030469	1.00[AFR][1000 genomes]
rs8031263	0.84[AFR][1000 genomes]
rs8035611	0.95[AFR][1000 genomes]
rs8038729	0.80[AFR][1000 genomes]
rs9672219	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1042140	chr15:76243040-76298555	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv542437	chr15:76243040-76298555	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76217200-76252000	Weak transcription	Pancreas	Pancrea
2	chr15:76247400-76253000	Weak transcription	Psoas Muscle	Psoas
3	chr15:76247800-76258000	Weak transcription	Hela-S3	cervix
4	chr15:76249800-76255200	Weak transcription	Stomach Mucosa	stomach
5	chr15:76249800-76262800	Weak transcription	Gastric	stomach
6	chr15:76250800-76260200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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