Variant report

Variant	rs9675047
Chromosome Location	chr17:37403575-37403576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:37355354..37357231-chr17:37401954..37404460,2	MCF-7	breast:
2	chr17:37402739..37404636-chr17:37405681..37408393,2	K562	blood:
3	chr17:37392376..37395976-chr17:37399419..37404375,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPL19-3	chr17:37401829-37406318	NONHSAT053433
2	lnc-RPL19-3	chr17:37403432-37404955	NONHSAT053436

Variant related genes	Relation type
ENSG00000108298	Chromatin interaction
ENSG00000265460	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16968698	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34136860	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35800016	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71369734	0.82[AFR][1000 genomes]
rs7222063	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8071061	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057470	chr17:37135183-37549816	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv543339	chr17:37135183-37549816	Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
4	nsv833441	chr17:37320807-37476796	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv908203	chr17:37327165-37405657	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv1061084	chr17:37333956-37501598	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
7	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
8	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
9	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
10	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
11	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
12	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37395000-37413000	Weak transcription	HSMMtube	muscle
2	chr17:37395000-37414600	Weak transcription	Psoas Muscle	Psoas
3	chr17:37395200-37409000	Weak transcription	Brain Anterior Caudate	brain
4	chr17:37395200-37409200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr17:37395200-37417000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr17:37395800-37403800	Weak transcription	A549	lung
7	chr17:37396000-37409200	Weak transcription	Pancreas	Pancrea
8	chr17:37396200-37406000	Weak transcription	Right Atrium	heart
9	chr17:37396400-37404600	Weak transcription	Thymus	Thymus
10	chr17:37396400-37410200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr17:37396400-37416400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr17:37400200-37405400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr17:37400800-37410600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr17:37401000-37404800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr17:37401000-37407000	Weak transcription	Fetal Stomach	stomach
16	chr17:37401000-37407400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr17:37401000-37407800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr17:37401000-37408000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr17:37401000-37408000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr17:37401000-37408000	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr17:37401000-37408200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr17:37401000-37408400	Weak transcription	Fetal Intestine Large	intestine
23	chr17:37401000-37408600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr17:37401000-37409000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr17:37401000-37409000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr17:37401000-37409200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr17:37401000-37409200	Weak transcription	Brain Hippocampus Middle	brain
28	chr17:37401000-37409200	Weak transcription	Brain Substantia Nigra	brain
29	chr17:37401000-37409200	Weak transcription	Right Ventricle	heart
30	chr17:37401000-37409400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr17:37401000-37413400	Weak transcription	HSMM	muscle
32	chr17:37401000-37414200	Weak transcription	Fetal Brain Male	brain
33	chr17:37401000-37414200	Weak transcription	NHDF-Ad	bronchial
34	chr17:37401000-37426000	Weak transcription	NHLF	lung
35	chr17:37401000-37433000	Weak transcription	Fetal Heart	heart
36	chr17:37401000-37437000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr17:37401200-37408000	Weak transcription	Fetal Lung	lung
38	chr17:37401200-37408200	Weak transcription	Primary T cells from cord blood	blood
39	chr17:37401200-37408200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr17:37401200-37408400	Weak transcription	Fetal Brain Female	brain
41	chr17:37401200-37409000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr17:37401200-37409000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr17:37401200-37409000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr17:37401200-37409200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr17:37401200-37409200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr17:37401200-37409200	Weak transcription	Fetal Thymus	thymus
47	chr17:37401200-37409200	Weak transcription	Lung	lung
48	chr17:37401200-37409200	Weak transcription	Ovary	ovary
49	chr17:37401200-37409200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr17:37401200-37409200	Weak transcription	Spleen	Spleen

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