Variant report

Variant	rs9676326
Chromosome Location	chr19:42950958-42950959
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:42948792..42951682-chr19:42987140..42989060,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10402559	1.00[EUR][1000 genomes]
rs10407596	1.00[EUR][1000 genomes]
rs10425757	1.00[EUR][1000 genomes]
rs11878991	1.00[EUR][1000 genomes]
rs11879456	1.00[EUR][1000 genomes]
rs11883406	1.00[EUR][1000 genomes]
rs11883425	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1975178	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28514529	1.00[EUR][1000 genomes]
rs35190409	1.00[EUR][1000 genomes]
rs36024215	1.00[EUR][1000 genomes]
rs41363350	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45439592	1.00[EUR][1000 genomes]
rs45459094	1.00[EUR][1000 genomes]
rs45463194	1.00[EUR][1000 genomes]
rs45482593	1.00[EUR][1000 genomes]
rs45542141	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs45551231	1.00[EUR][1000 genomes]
rs45583435	1.00[EUR][1000 genomes]
rs45617042	1.00[EUR][1000 genomes]
rs45618138	1.00[EUR][1000 genomes]
rs45620339	1.00[EUR][1000 genomes]
rs61739430	1.00[EUR][1000 genomes]
rs7246161	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7246227	1.00[EUR][1000 genomes]
rs7246591	1.00[EUR][1000 genomes]
rs73562334	1.00[EUR][1000 genomes]
rs73562336	1.00[EUR][1000 genomes]
rs8105027	1.00[EUR][1000 genomes]
rs8106654	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42938000-42954200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr19:42946200-42953600	Weak transcription	Adipose Nuclei	Adipose
3	chr19:42947000-42952800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr19:42947000-42952800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr19:42947000-42952800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr19:42947200-42952200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr19:42947200-42953200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr19:42947200-42954400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr19:42947200-42954400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr19:42947200-42954400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr19:42948200-42951800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr19:42948200-42953000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr19:42948200-42956800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr19:42948600-42952800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr19:42948600-42953600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr19:42948600-42953800	Weak transcription	Colonic Mucosa	Colon
17	chr19:42948600-42954400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr19:42949000-42951200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr19:42949000-42952600	Weak transcription	A549	lung
20	chr19:42949000-42953800	Weak transcription	Liver	Liver
21	chr19:42949000-42953800	Weak transcription	Fetal Intestine Large	intestine
22	chr19:42949000-42953800	Weak transcription	Fetal Intestine Small	intestine
23	chr19:42949000-42954400	Weak transcription	Pancreas	Pancrea
24	chr19:42949800-42954200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr19:42950000-42952400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr19:42950200-42955400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr19:42950400-42951600	Weak transcription	Lung	lung
28	chr19:42950400-42952000	Weak transcription	HepG2	liver
29	chr19:42950400-42952800	Weak transcription	Stomach Mucosa	stomach

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