Variant report
| Variant | rs9684201 |
|---|---|
| Chromosome Location | chr4:120000479-120000480 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10518309 | 0.89[ASN][1000 genomes] |
| rs16997547 | 1.00[EUR][1000 genomes] |
| rs16997549 | 1.00[EUR][1000 genomes] |
| rs17050041 | 1.00[EUR][1000 genomes] |
| rs17050049 | 1.00[EUR][1000 genomes] |
| rs17050052 | 1.00[EUR][1000 genomes] |
| rs17050056 | 1.00[EUR][1000 genomes] |
| rs17050104 | 0.89[ASN][1000 genomes] |
| rs17050127 | 0.81[ASN][1000 genomes] |
| rs28703190 | 1.00[EUR][1000 genomes] |
| rs57214946 | 1.00[EUR][1000 genomes] |
| rs57626477 | 1.00[EUR][1000 genomes] |
| rs60158411 | 0.81[ASN][1000 genomes] |
| rs60317087 | 1.00[EUR][1000 genomes] |
| rs60779416 | 0.81[ASN][1000 genomes] |
| rs6813762 | 1.00[EUR][1000 genomes] |
| rs6824074 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6837925 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6839198 | 1.00[EUR][1000 genomes] |
| rs6843548 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6848910 | 0.81[ASN][1000 genomes] |
| rs6854148 | 1.00[EUR][1000 genomes] |
| rs72907289 | 1.00[EUR][1000 genomes] |
| rs72908513 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7678499 | 1.00[EUR][1000 genomes] |
| rs7678948 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916641 | chr4:119780023-120777320 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 72 gene(s) | inside rSNPs | diseases |
| 2 | nsv948802 | chr4:119844269-120208926 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:119975800-120003000 | Weak transcription | Left Ventricle | heart |
