Variant report

Variant	rs9684602
Chromosome Location	chr4:87051976-87051977
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28373627	1.00[AFR][1000 genomes]
rs28433471	1.00[AFR][1000 genomes]
rs28760360	1.00[AFR][1000 genomes]
rs57298875	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2754254	chr4:86979147-87108510	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879521	chr4:86979927-87165758	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1005338	chr4:87023398-87108555	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87035800-87077600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:87039400-87053600	Weak transcription	Fetal Stomach	stomach
3	chr4:87040600-87053400	Weak transcription	Fetal Kidney	kidney
4	chr4:87048600-87052000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:87049000-87061800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:87050400-87052600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr4:87050600-87052400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:87050600-87052400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:87050800-87052200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:87050800-87052200	Enhancers	Primary hematopoietic stem cells	blood
11	chr4:87050800-87052200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:87051000-87070200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:87051600-87052800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:87051800-87052000	Enhancers	Ovary	ovary
15	chr4:87051800-87052800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:87051800-87052800	Enhancers	Brain Angular Gyrus	brain
17	chr4:87051800-87052800	Enhancers	Brain Anterior Caudate	brain
18	chr4:87051800-87053000	Enhancers	NHDF-Ad	bronchial
19	chr4:87051800-87053200	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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