Variant report

Variant	rs9685361
Chromosome Location	chr4:187644480-187644481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:187632290..187634581-chr4:187642578..187644901,2	K562	blood:
2	chr4:187638279..187640138-chr4:187642183..187644541,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12511117	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025088	chr4:187407683-187674585	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1025244	chr4:187419770-188284813	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1034212	chr4:187437895-188030805	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv537438	chr4:187437895-188030805	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv532745	chr4:187471692-188205443	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1022262	chr4:187475862-187848284	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1024705	chr4:187534005-187849091	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1026970	chr4:187537418-187913351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv596440	chr4:187538133-187848075	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1031603	chr4:187636716-188020741	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv822892	chr4:187640281-187653074	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv822893	chr4:187642198-187652700	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
13	nsv822894	chr4:187643349-187648419	Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
14	esv3356398	chr4:187643483-187646331	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:187642000-187646800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:187642600-187646200	Active TSS	H1 Cell Line	embryonic stem cell
3	chr4:187642600-187649200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:187642800-187649000	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr4:187643000-187646200	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr4:187643000-187646400	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr4:187643000-187648600	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr4:187643000-187648600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:187643200-187648600	Active TSS	Right Ventricle	heart
10	chr4:187643200-187648600	Active TSS	HSMM	muscle
11	chr4:187643200-187648600	Active TSS	NHLF	lung
12	chr4:187643200-187648800	Active TSS	Osteobl	bone
13	chr4:187643200-187649000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:187643200-187649000	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr4:187643200-187649000	Active TSS	HMEC	breast
16	chr4:187643200-187649200	Active TSS	Fetal Intestine Small	intestine
17	chr4:187643200-187649800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:187643400-187645400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:187643400-187646000	Active TSS	K562	blood
20	chr4:187643400-187646200	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr4:187643400-187648600	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr4:187643400-187649000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:187643400-187649000	Active TSS	NHDF-Ad	bronchial
24	chr4:187643400-187650000	Active TSS	Duodenum Mucosa	Duodenum
25	chr4:187643600-187644600	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr4:187643600-187644600	Active TSS	Right Atrium	heart
27	chr4:187643600-187645200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
28	chr4:187643600-187645400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:187643600-187645400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:187643600-187645800	Active TSS	HepG2	liver
31	chr4:187643600-187646200	Active TSS	Rectal Smooth Muscle	rectum
32	chr4:187643600-187646800	Active TSS	Colonic Mucosa	Colon
33	chr4:187643600-187647400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:187643600-187647600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr4:187643600-187648200	Active TSS	Cortex derived primary cultured neurospheres	brain
36	chr4:187643600-187648400	Active TSS	Stomach Mucosa	stomach
37	chr4:187643600-187648600	Active TSS	Colon Smooth Muscle	Colon
38	chr4:187643600-187648800	Active TSS	Brain Anterior Caudate	brain
39	chr4:187643600-187648800	Active TSS	A549	lung
40	chr4:187643600-187649000	Active TSS	HSMMtube	muscle
41	chr4:187643800-187645400	Active TSS	Brain Germinal Matrix	brain
42	chr4:187643800-187645600	Active TSS	Brain Angular Gyrus	brain
43	chr4:187643800-187645600	Bivalent/Poised TSS	Fetal Brain Female	brain
44	chr4:187643800-187646000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr4:187643800-187646200	Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr4:187643800-187646200	Active TSS	Brain Substantia Nigra	brain
47	chr4:187643800-187647400	Active TSS	Fetal Intestine Large	intestine
48	chr4:187643800-187648400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
49	chr4:187643800-187648400	Bivalent/Poised TSS	Fetal Stomach	stomach
50	chr4:187643800-187648600	Active TSS	HUES6 Cell Line	embryonic stem cell

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