Variant report

Variant	rs968778
Chromosome Location	chr3:81468139-81468140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1677057	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17018940	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28367881	0.86[EUR][1000 genomes]
rs35058426	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59299387	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62265374	0.85[EUR][1000 genomes]
rs62265376	0.86[EUR][1000 genomes]
rs62265377	0.87[EUR][1000 genomes]
rs7615728	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9818063	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9822115	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9843238	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9847959	0.87[EUR][1000 genomes]
rs9867226	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9871529	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81466800-81469000	Enhancers	Osteobl	bone
2	chr3:81467400-81468800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:81467800-81469000	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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