Variant report
| Variant | rs9688292 |
|---|---|
| Chromosome Location | chr5:92725092-92725093 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10044190 | 1.00[ASN][1000 genomes] |
| rs10053101 | 1.00[ASN][1000 genomes] |
| rs10079491 | 1.00[ASN][1000 genomes] |
| rs10476518 | 1.00[ASN][1000 genomes] |
| rs1157899 | 1.00[ASN][1000 genomes] |
| rs11956893 | 1.00[ASN][1000 genomes] |
| rs13355597 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13360184 | 1.00[ASN][1000 genomes] |
| rs1460748 | 1.00[ASN][1000 genomes] |
| rs6875613 | 1.00[ASN][1000 genomes] |
| rs6875617 | 1.00[ASN][1000 genomes] |
| rs6891846 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73131381 | 1.00[ASN][1000 genomes] |
| rs73131385 | 1.00[ASN][1000 genomes] |
| rs73131390 | 1.00[ASN][1000 genomes] |
| rs73131401 | 1.00[ASN][1000 genomes] |
| rs73133207 | 1.00[ASN][1000 genomes] |
| rs73133209 | 1.00[ASN][1000 genomes] |
| rs9314083 | 1.00[ASN][1000 genomes] |
| rs9314084 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830400 | chr5:92515026-92738896 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv830402 | chr5:92703901-92847345 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:92719000-92730400 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
