Variant report

Variant	rs9690066
Chromosome Location	chr7:101889490-101889491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101888648..101890860-chr7:101891025..101893521,3	K562	blood:
2	chr7:101460089..101461652-chr7:101888136..101890464,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12539258	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17498402	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2268030	0.84[EUR][1000 genomes]
rs55752209	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56076326	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56078398	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56293444	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56377525	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62484935	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187849	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73187850	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73187852	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73187854	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101846000-101904200	Weak transcription	Stomach Mucosa	stomach
2	chr7:101852400-101893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:101852800-101897000	Weak transcription	NHEK	skin
4	chr7:101854400-101894800	Weak transcription	K562	blood
5	chr7:101858400-101897600	Weak transcription	Psoas Muscle	Psoas
6	chr7:101865000-101904200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:101866000-101892600	Weak transcription	Osteobl	bone
8	chr7:101866000-101896400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:101866800-101907600	Weak transcription	NH-A	brain
10	chr7:101867400-101898000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr7:101867400-101898000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr7:101867800-101900400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:101868000-101894000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:101870000-101894200	Strong transcription	Fetal Thymus	thymus
15	chr7:101870200-101898000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr7:101870400-101895800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:101871800-101891600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr7:101872400-101898800	Weak transcription	Brain Angular Gyrus	brain
19	chr7:101872400-101904000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr7:101872600-101889600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr7:101872800-101892000	Weak transcription	Small Intestine	intestine
22	chr7:101873600-101894600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr7:101873600-101904000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:101875600-101894200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr7:101875600-101898000	Strong transcription	Dnd41	blood
26	chr7:101877600-101895400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:101878000-101894400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr7:101878600-101893400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr7:101878600-101895800	Weak transcription	HSMMtube	muscle
30	chr7:101878600-101896000	Weak transcription	HSMM	muscle
31	chr7:101878600-101896200	Weak transcription	Brain Anterior Caudate	brain
32	chr7:101880400-101898400	Strong transcription	Fetal Stomach	stomach
33	chr7:101881800-101893800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr7:101882600-101890200	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr7:101882800-101894800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr7:101883000-101891600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr7:101883000-101891800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:101883000-101892200	Weak transcription	Colonic Mucosa	Colon
39	chr7:101883000-101896600	Weak transcription	NHLF	lung
40	chr7:101883000-101904000	Weak transcription	Fetal Brain Female	brain
41	chr7:101883200-101891800	Weak transcription	Esophagus	oesophagus
42	chr7:101883400-101895000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr7:101884000-101893400	Weak transcription	Primary B cells from cord blood	blood
44	chr7:101884200-101891600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr7:101884200-101892000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:101884200-101904000	Weak transcription	Colon Smooth Muscle	Colon
47	chr7:101884400-101895200	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr7:101884600-101892600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr7:101884800-101891600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr7:101884800-101892800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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