Variant report

Variant	rs9691292
Chromosome Location	chr7:137644955-137644956
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:137642477..137645042-chr7:137646430..137648183,3	MCF-7	breast:
2	chr7:137641418..137645622-chr7:137676350..137680595,4	MCF-7	breast:
3	chr7:137642984..137645404-chr7:137681630..137683581,2	K562	blood:
4	chr7:137632725..137635704-chr7:137642617..137645023,3	MCF-7	breast:
5	chr7:137644287..137647017-chr7:137655823..137657614,2	K562	blood:
6	chr7:137641810..137650191-chr7:137677657..137683130,9	K562	blood:
7	chr7:137636438..137645214-chr7:137681826..137688964,19	MCF-7	breast:
8	chr7:137643171..137645975-chr7:137687593..137689334,2	K562	blood:
9	chr7:137643252..137645330-chr7:137685102..137686637,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000122787	Chromatin interaction
ENSG00000182158	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10224250	0.91[CEU][hapmap]
rs10260415	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10267160	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10488443	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13228781	1.00[CEU][hapmap]
rs13245803	1.00[CEU][hapmap]
rs1471436	0.91[CEU][hapmap]
rs17169459	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17183616	1.00[CEU][hapmap]
rs17190292	1.00[CEU][hapmap]
rs17190987	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17275136	1.00[CEU][hapmap]
rs34100060	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs765857	1.00[CEU][hapmap]
rs7812168	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137621400-137651800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr7:137626000-137646200	Weak transcription	HMEC	breast
3	chr7:137629400-137649600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:137635200-137663400	Weak transcription	Primary B cells from cord blood	blood
5	chr7:137635600-137650800	Weak transcription	Primary T cells from cord blood	blood
6	chr7:137636000-137650800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:137636200-137650600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:137637400-137646800	Weak transcription	Spleen	Spleen
9	chr7:137639000-137647200	Weak transcription	NHEK	skin
10	chr7:137639000-137654800	Weak transcription	Brain Angular Gyrus	brain
11	chr7:137639200-137646600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:137639200-137650600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr7:137639400-137652000	Weak transcription	Colonic Mucosa	Colon
14	chr7:137639400-137655000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:137639600-137645800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:137639600-137650800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:137640000-137645800	Weak transcription	Brain Hippocampus Middle	brain
18	chr7:137640000-137647600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:137640000-137654600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:137640200-137650000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr7:137640200-137651600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr7:137640600-137652400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr7:137640800-137646400	Weak transcription	Right Ventricle	heart
24	chr7:137640800-137647200	Weak transcription	Ovary	ovary
25	chr7:137641400-137647800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr7:137642000-137646000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:137642200-137651600	Weak transcription	Fetal Heart	heart
28	chr7:137642400-137651800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:137642600-137647600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr7:137642800-137646000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:137642800-137647800	Weak transcription	Gastric	stomach
32	chr7:137642800-137648400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:137642800-137651400	Weak transcription	HSMMtube	muscle
34	chr7:137642800-137652000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:137642800-137652200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr7:137643000-137648400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:137643000-137649000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:137643000-137652400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr7:137643200-137645400	Strong transcription	HSMM	muscle
40	chr7:137643400-137646000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr7:137643600-137646000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr7:137643600-137646200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr7:137643600-137646400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr7:137643600-137651800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr7:137643600-137652200	Weak transcription	Liver	Liver
46	chr7:137643800-137646400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:137643800-137651600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr7:137643800-137654800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr7:137644000-137645800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr7:137644000-137646000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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