Variant report

Variant	rs969175
Chromosome Location	chr7:126397903-126397904
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10230679	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs10232779	1.00[AMR][1000 genomes]
rs10244102	0.90[YRI][hapmap]
rs10244839	0.89[YRI][hapmap]
rs10247812	0.88[YRI][hapmap]
rs10248154	1.00[AMR][1000 genomes]
rs10253111	0.90[YRI][hapmap]
rs10254454	0.89[YRI][hapmap]
rs10267217	0.82[YRI][hapmap]
rs10272830	0.90[YRI][hapmap]
rs10273625	0.88[YRI][hapmap]
rs10281480	0.89[YRI][hapmap]
rs28409907	1.00[AMR][1000 genomes]
rs28445142	1.00[AMR][1000 genomes]
rs28622546	1.00[AMR][1000 genomes]
rs28712510	1.00[AMR][1000 genomes]
rs28737321	1.00[AMR][1000 genomes]
rs61755403	1.00[AMR][1000 genomes]
rs6962330	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs6965226	1.00[AMR][1000 genomes]
rs727904	0.90[YRI][hapmap]
rs73446490	1.00[AMR][1000 genomes]
rs73451274	1.00[AMR][1000 genomes]
rs7801979	0.88[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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