Variant report

Variant	rs9692521
Chromosome Location	chr7:124956491-124956492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:124699717..124700520-chr7:124956250..124957181,4	MCF-7	breast:
2	chr7:124701709..124702473-chr7:124956278..124956931,2	MCF-7	breast:
3	chr7:124682680..124683208-chr7:124956334..124957073,2	MCF-7	breast:
4	chr7:124699605..124700536-chr7:124955869..124957164,4	MCF-7	breast:
5	chr7:124699688..124701477-chr7:124956011..124957871,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10500105	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13307715	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1346368	0.84[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs1427577	0.90[ASN][1000 genomes]
rs1427578	0.90[ASN][1000 genomes]
rs1427581	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17331251	0.84[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs17390435	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1820593	0.97[ASN][1000 genomes]
rs1834827	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28667732	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34184477	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34330657	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34574207	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35038175	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35074599	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35275809	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35552657	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35573480	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36103965	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58600715	0.92[ASN][1000 genomes]
rs61518741	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62477097	0.92[ASN][1000 genomes]
rs62481756	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6467001	0.83[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs6467002	0.87[ASN][1000 genomes]
rs6948950	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6958411	0.90[ASN][1000 genomes]
rs6964687	0.84[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs6965492	1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.80[MEX][hapmap];0.92[ASN][1000 genomes]
rs6970401	0.84[CHB][hapmap];0.80[CHD][hapmap];0.84[JPT][hapmap];0.86[MEX][hapmap];0.90[ASN][1000 genomes]
rs6973477	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6973838	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7780337	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7795867	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7804055	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9691923	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422188	chr7:124782873-125254203	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2761087	chr7:124823624-125429662	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv889140	chr7:124921028-125042024	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv464709	chr7:124921028-125068580	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv608345	chr7:124921028-125068580	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv889141	chr7:124935779-125072969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9692521	TAS2R16	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124939800-124956800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:124956200-124957200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr7:124956400-124956600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:124956400-124956800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:124956400-124956800	Enhancers	Lung	lung
6	chr7:124956400-124957000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr7:124956400-124957000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:124956400-124957200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:124956400-124957200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:124956400-124957200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:124956400-124957200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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