Variant report

Variant	rs9699789
Chromosome Location	chr1:179504790-179504791
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10913755	0.86[ASN][1000 genomes]
rs10913760	0.86[ASN][1000 genomes]
rs10913761	0.86[ASN][1000 genomes]
rs10913762	0.86[ASN][1000 genomes]
rs10913766	0.86[ASN][1000 genomes]
rs10913767	0.86[ASN][1000 genomes]
rs10913768	0.86[ASN][1000 genomes]
rs10913769	0.86[ASN][1000 genomes]
rs10913770	0.86[ASN][1000 genomes]
rs10913771	0.86[ASN][1000 genomes]
rs10913809	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11577579	0.86[ASN][1000 genomes]
rs11578241	0.86[ASN][1000 genomes]
rs11582158	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11582255	0.86[ASN][1000 genomes]
rs11582293	0.86[ASN][1000 genomes]
rs11582754	0.86[ASN][1000 genomes]
rs11586744	0.80[ASN][1000 genomes]
rs11802624	0.86[ASN][1000 genomes]
rs11802625	0.86[ASN][1000 genomes]
rs11802637	0.86[ASN][1000 genomes]
rs12401957	0.86[ASN][1000 genomes]
rs12403885	0.90[ASN][1000 genomes]
rs12408443	0.80[ASN][1000 genomes]
rs12409337	0.80[ASN][1000 genomes]
rs12722736	0.86[ASN][1000 genomes]
rs12724496	0.86[ASN][1000 genomes]
rs12724634	0.86[ASN][1000 genomes]
rs12724901	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12729067	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12729775	0.86[ASN][1000 genomes]
rs12736279	1.00[ASN][1000 genomes]
rs12736545	1.00[ASN][1000 genomes]
rs12738929	0.86[ASN][1000 genomes]
rs12739116	0.86[ASN][1000 genomes]
rs12744251	0.86[ASN][1000 genomes]
rs12750591	0.86[ASN][1000 genomes]
rs12757935	0.80[ASN][1000 genomes]
rs12758415	0.80[ASN][1000 genomes]
rs1328597	1.00[ASN][1000 genomes]
rs1328598	1.00[ASN][1000 genomes]
rs1410589	1.00[ASN][1000 genomes]
rs1576224	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2209919	1.00[ASN][1000 genomes]
rs34291276	1.00[ASN][1000 genomes]
rs34463289	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35401719	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35427395	1.00[ASN][1000 genomes]
rs36057553	0.93[ASN][1000 genomes]
rs3754133	0.98[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3765548	0.90[ASN][1000 genomes]
rs4130266	0.86[ASN][1000 genomes]
rs4360491	0.80[ASN][1000 genomes]
rs4418554	0.80[ASN][1000 genomes]
rs4454499	0.86[ASN][1000 genomes]
rs4651028	0.86[ASN][1000 genomes]
rs4651037	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61821011	0.86[ASN][1000 genomes]
rs61826364	1.00[ASN][1000 genomes]
rs61826365	1.00[ASN][1000 genomes]
rs7513782	0.80[ASN][1000 genomes]
rs7513973	0.80[ASN][1000 genomes]
rs7532155	0.86[ASN][1000 genomes]
rs7551894	0.80[ASN][1000 genomes]
rs7554103	0.80[ASN][1000 genomes]
rs9662026	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522746	chr1:179501365-179518459	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9699789	AXDND1	cis	Thyroid	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179487200-179515000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr1:179498600-179509600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:179501200-179509600	Weak transcription	H9 Cell Line	embryonic stem cell

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