Variant report

Variant	rs9706029
Chromosome Location	chr12:86412305-86412306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10082857	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10746359	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs10779224	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10779225	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10779226	1.00[JPT][hapmap]
rs10779227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10779236	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs10863113	0.84[EUR][1000 genomes]
rs10863128	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10863129	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10863131	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10863139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs10863141	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10863149	1.00[CHB][hapmap]
rs10863164	1.00[CHB][hapmap]
rs11117124	0.84[EUR][1000 genomes]
rs11117148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11117149	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11117150	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11117152	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11117154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap]
rs11117171	0.82[YRI][hapmap]
rs11513955	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11608539	0.80[EUR][1000 genomes]
rs11614214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11615948	0.86[GIH][hapmap];0.88[MKK][hapmap];0.92[TSI][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12298516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1354258	1.00[CHB][hapmap]
rs1493407	0.84[CEU][hapmap]
rs1502803	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1698754	0.83[CEU][hapmap]
rs1847206	1.00[ASN][1000 genomes]
rs61931064	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61931120	0.91[ASN][1000 genomes]
rs61931121	0.91[ASN][1000 genomes]
rs61931135	0.86[ASN][1000 genomes]
rs6539944	1.00[ASN][1000 genomes]
rs6539947	0.96[ASN][1000 genomes]
rs7135154	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7136221	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs721829	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7294859	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7295033	0.92[ASN][1000 genomes]
rs7302043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap]
rs7307686	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7398950	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7485853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7486591	1.00[CEU][hapmap]
rs7489114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap]
rs7961367	1.00[CEU][hapmap];0.83[CHD][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7965726	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs7967417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[TSI][hapmap]
rs7971447	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7976573	0.80[EUR][1000 genomes]
rs839091	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs839135	0.84[CEU][hapmap];0.80[ASN][1000 genomes]
rs839181	0.80[ASN][1000 genomes]
rs9651977	0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9668994	1.00[JPT][hapmap]
rs9669353	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap]
rs9738989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804820	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv559667	chr12:86318004-86416212	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832476	chr12:86389751-86497122	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv798	chr12:86399822-86447451	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv975619	chr12:86404933-86424490	Inactive region	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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