Variant report

Variant	rs970985
Chromosome Location	chr6:133739242-133739243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11968392	1.00[CEU][hapmap]
rs12660521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12661876	0.94[ASN][1000 genomes]
rs12662135	1.00[CEU][hapmap]
rs12663756	0.94[ASN][1000 genomes]
rs12664235	1.00[CEU][hapmap]
rs12664324	0.93[CHB][hapmap];0.95[ASN][1000 genomes]
rs12665147	0.94[ASN][1000 genomes]
rs17062561	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs17062582	1.00[CEU][hapmap]
rs17062630	1.00[CEU][hapmap]
rs1855988	1.00[CEU][hapmap]
rs1883388	1.00[CEU][hapmap]
rs2076256	0.95[ASN][1000 genomes]
rs3777808	1.00[CEU][hapmap]
rs3777822	1.00[CEU][hapmap]
rs3777828	1.00[CEU][hapmap]
rs3777853	0.96[ASN][1000 genomes]
rs3777856	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3777868	1.00[CEU][hapmap]
rs3777871	1.00[CEU][hapmap]
rs3777873	1.00[CEU][hapmap]
rs3777874	1.00[CEU][hapmap]
rs3777878	1.00[CEU][hapmap]
rs3777879	1.00[CEU][hapmap]
rs3777880	1.00[CEU][hapmap]
rs3777883	1.00[CEU][hapmap]
rs3777884	1.00[CEU][hapmap]
rs3777885	1.00[CEU][hapmap]
rs3798355	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs55963818	0.94[ASN][1000 genomes]
rs56140782	0.95[ASN][1000 genomes]
rs58512026	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6899314	1.00[CEU][hapmap]
rs6905892	1.00[CEU][hapmap]
rs6921578	1.00[CEU][hapmap]
rs7773315	1.00[CEU][hapmap]
rs970984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025700	chr6:133726264-133748758	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604699	chr6:133726502-133747840	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1019755	chr6:133726502-133748758	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020698	chr6:133726502-133751161	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv525971	chr6:133726646-133753825	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv604700	chr6:133732404-133746497	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133720200-133748400	Weak transcription	Hela-S3	cervix
2	chr6:133720400-133749600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:133726600-133752200	Weak transcription	Right Atrium	heart
4	chr6:133732000-133744000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:133732200-133740000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:133732600-133758200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:133734200-133740800	Weak transcription	Psoas Muscle	Psoas
8	chr6:133735400-133744000	Weak transcription	Left Ventricle	heart
9	chr6:133736400-133752200	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:133737400-133746800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:133739200-133739400	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links