Variant report

Variant	rs971805
Chromosome Location	chr4:147927315-147927316
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10519848	0.90[CHD][hapmap]
rs17472966	0.83[ASN][1000 genomes]
rs2289164	0.83[MEX][hapmap];0.82[TSI][hapmap]
rs2357439	0.83[ASN][1000 genomes]
rs28456274	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35334988	0.82[ASN][1000 genomes]
rs35430502	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3827592	0.81[ASN][1000 genomes]
rs6828944	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7660168	0.93[CHD][hapmap];0.83[ASN][1000 genomes]
rs7668995	0.81[ASN][1000 genomes]
rs969512	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs974278	0.83[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.99[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461676	chr4:147927227-147962432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv595652	chr4:147927227-147962432	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs971805	ARHGAP10	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147925800-147932600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:147925800-147932600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:147925800-147936600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:147926000-147927800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:147926000-147932200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:147926600-147932600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:147926800-147932000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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