Variant report

Variant	rs9729380
Chromosome Location	chr1:85255593-85255594
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12057661	1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs12062402	0.85[AFR][1000 genomes]
rs12062585	1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs12065415	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs531169	1.00[JPT][hapmap]
rs74096144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9660386	0.86[ASN][1000 genomes]
rs9728120	1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9729198	0.87[AFR][1000 genomes]
rs9729375	1.00[AFR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85241000-85263600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:85251200-85261600	Weak transcription	Right Atrium	heart
3	chr1:85251800-85263400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:85254800-85255600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:85254800-85255600	Enhancers	HMEC	breast
6	chr1:85254800-85255800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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