Variant report

Variant	rs973689
Chromosome Location	chr3:81512525-81512526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10440071	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs28367881	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62265374	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62265376	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62265377	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7622930	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[ASN][1000 genomes]
rs7627081	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs9309871	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9821673	0.86[YRI][hapmap]
rs9833541	0.97[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9847959	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9861355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs9862299	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9863396	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1012133	chr3:81499082-81817471	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81510200-81517000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:81510800-81513000	Enhancers	HepG2	liver
3	chr3:81512000-81512600	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr3:81512200-81512600	Enhancers	Fetal Lung	lung
5	chr3:81512200-81512600	Enhancers	Lung	lung
6	chr3:81512200-81512800	Enhancers	Brain Germinal Matrix	brain
7	chr3:81512200-81513000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:81512200-81513000	Enhancers	Adipose Nuclei	Adipose
9	chr3:81512200-81513400	Enhancers	NHDF-Ad	bronchial
10	chr3:81512200-81513600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:81512400-81512600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:81512400-81512600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:81512400-81513400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links