Variant report

Variant	rs974856
Chromosome Location	chr1:172695291-172695292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11581258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117891	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12136885	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12731355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1492906	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17370861	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2172399	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34789243	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57349684	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859633	0.82[JPT][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172689200-172696800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:172689200-172700400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:172691800-172696600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr1:172693400-172712200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:172693600-172696200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:172693800-172697400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:172694400-172696000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr1:172694600-172695800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:172694600-172696000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:172694600-172696000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:172694600-172696200	Enhancers	GM12878-XiMat	blood
12	chr1:172694600-172697400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr1:172694800-172695800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:172694800-172696000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:172695000-172695400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:172695200-172695800	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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