Variant report
| Variant | rs9753383 |
|---|---|
| Chromosome Location | chr2:56045915-56045916 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10496051 | 0.96[ASN][1000 genomes] |
| rs11125601 | 0.89[ASN][1000 genomes] |
| rs11125602 | 0.96[ASN][1000 genomes] |
| rs11125603 | 0.95[ASN][1000 genomes] |
| rs12464737 | 0.96[ASN][1000 genomes] |
| rs12472893 | 0.91[ASN][1000 genomes] |
| rs12478566 | 0.80[AMR][1000 genomes] |
| rs1346782 | 0.95[ASN][1000 genomes] |
| rs1346786 | 0.81[EUR][1000 genomes] |
| rs1430202 | 0.83[ASN][1000 genomes] |
| rs1430203 | 0.80[AMR][1000 genomes] |
| rs17047234 | 0.86[ASN][1000 genomes] |
| rs1946545 | 0.96[ASN][1000 genomes] |
| rs1985163 | 0.96[ASN][1000 genomes] |
| rs2009262 | 0.85[ASN][1000 genomes] |
| rs4146921 | 0.89[ASN][1000 genomes] |
| rs4146922 | 0.92[ASN][1000 genomes] |
| rs4347871 | 0.94[ASN][1000 genomes] |
| rs58027672 | 0.80[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs62164463 | 0.92[ASN][1000 genomes] |
| rs62167713 | 0.96[ASN][1000 genomes] |
| rs6545522 | 0.94[ASN][1000 genomes] |
| rs6724369 | 0.96[ASN][1000 genomes] |
| rs7560657 | 0.86[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7563032 | 0.87[ASN][1000 genomes] |
| rs7591694 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531374 | chr2:55653723-56299784 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:56038800-56047200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
