Variant report

Variant	rs975552
Chromosome Location	chr2:210651344-210651345
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10182553	0.88[ASN][1000 genomes]
rs10183590	0.81[EUR][1000 genomes]
rs10183604	0.81[EUR][1000 genomes]
rs10490021	0.81[EUR][1000 genomes]
rs10490022	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10804176	0.85[EUR][1000 genomes]
rs10932305	0.85[EUR][1000 genomes]
rs10932306	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11674672	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11674950	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677476	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11677489	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11677975	0.81[EUR][1000 genomes]
rs11678044	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11679862	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11680007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11682692	0.81[EUR][1000 genomes]
rs11687043	0.88[EUR][1000 genomes]
rs11689771	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11692345	0.88[EUR][1000 genomes]
rs11692608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693202	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11884376	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11887161	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11898077	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11900602	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12105654	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12105660	0.98[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12613705	0.83[EUR][1000 genomes]
rs12614031	0.81[EUR][1000 genomes]
rs12615516	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12616589	0.81[JPT][hapmap]
rs12619203	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12619253	0.81[EUR][1000 genomes]
rs12619409	0.85[EUR][1000 genomes]
rs12622305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1476876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509468	0.82[JPT][hapmap]
rs1509469	0.81[JPT][hapmap]
rs16843421	0.81[EUR][1000 genomes]
rs16843453	0.81[EUR][1000 genomes]
rs16843515	0.81[EUR][1000 genomes]
rs16843544	0.85[EUR][1000 genomes]
rs16843614	0.85[EUR][1000 genomes]
rs16843618	0.85[EUR][1000 genomes]
rs16843626	0.85[EUR][1000 genomes]
rs2098204	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2215624	0.88[EUR][1000 genomes]
rs2215625	0.88[EUR][1000 genomes]
rs2239553	0.85[EUR][1000 genomes]
rs2239672	0.81[EUR][1000 genomes]
rs2268042	0.85[EUR][1000 genomes]
rs2284360	0.85[EUR][1000 genomes]
rs2300154	0.85[EUR][1000 genomes]
rs2710477	0.92[JPT][hapmap]
rs35337581	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35872449	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3754597	0.85[EUR][1000 genomes]
rs3768810	0.81[EUR][1000 genomes]
rs3768813	0.81[EUR][1000 genomes]
rs3768814	0.81[EUR][1000 genomes]
rs3768826	0.81[EUR][1000 genomes]
rs3768835	0.81[EUR][1000 genomes]
rs3820746	0.82[EUR][1000 genomes]
rs3886931	0.81[EUR][1000 genomes]
rs4672559	0.85[EUR][1000 genomes]
rs56825045	0.85[EUR][1000 genomes]
rs57305145	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57542539	0.85[EUR][1000 genomes]
rs57637604	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57853945	0.85[EUR][1000 genomes]
rs57990979	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58248939	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58295121	0.85[EUR][1000 genomes]
rs58525719	0.85[EUR][1000 genomes]
rs58779755	0.85[EUR][1000 genomes]
rs59155421	0.81[EUR][1000 genomes]
rs59555743	0.85[EUR][1000 genomes]
rs60161291	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60640585	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61333809	0.85[EUR][1000 genomes]
rs61356588	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61420319	0.85[EUR][1000 genomes]
rs6716831	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6720659	0.81[EUR][1000 genomes]
rs6742314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73074733	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73074750	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73074751	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73074763	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73074778	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074779	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074784	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074787	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074791	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074801	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73076704	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73076710	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs741006	0.81[EUR][1000 genomes]
rs7564369	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7569393	0.85[EUR][1000 genomes]
rs7594601	0.85[EUR][1000 genomes]
rs7595017	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs975551	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv963889	chr2:210645653-210651831	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210637600-210653800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:210638200-210661400	Weak transcription	Fetal Brain Female	brain
3	chr2:210638400-210651800	Weak transcription	Brain Angular Gyrus	brain
4	chr2:210638400-210652200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:210638400-210660000	Weak transcription	Fetal Brain Male	brain
6	chr2:210643800-210655800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:210644400-210655800	Weak transcription	Brain Germinal Matrix	brain
8	chr2:210646000-210652400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:210646000-210656600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr2:210646400-210654600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr2:210648600-210653800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:210648600-210655800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:210650400-210654800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr2:210650600-210652400	Strong transcription	Brain Anterior Caudate	brain
15	chr2:210650600-210652800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:210650800-210652000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:210651200-210662000	Weak transcription	Brain Inferior Temporal Lobe	brain

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