Variant report

Variant	rs976171
Chromosome Location	chr14:37526827-37526828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1012198	1.00[CEU][hapmap]
rs10134406	1.00[CEU][hapmap]
rs10136238	0.92[EUR][1000 genomes]
rs10141752	1.00[CEU][hapmap]
rs10220604	1.00[CEU][hapmap]
rs1057564	1.00[CEU][hapmap]
rs12889634	0.82[CEU][hapmap]
rs17091939	1.00[CEU][hapmap]
rs17106209	1.00[CEU][hapmap]
rs17106216	1.00[CEU][hapmap]
rs17106509	1.00[CEU][hapmap]
rs17178484	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17178639	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17178764	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17767749	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17767929	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17841015	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1884775	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1950372	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1950814	1.00[CEU][hapmap]
rs1955758	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1956423	1.00[CEU][hapmap]
rs1956424	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2038309	1.00[CEU][hapmap]
rs2057171	0.82[CEU][hapmap]
rs2415373	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2415379	1.00[CEU][hapmap]
rs2415380	1.00[CEU][hapmap]
rs2415384	0.82[CEU][hapmap]
rs2415386	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs28517624	0.92[EUR][1000 genomes]
rs35576618	1.00[CEU][hapmap]
rs6571781	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6571782	0.82[CEU][hapmap]
rs6571783	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6571785	1.00[CEU][hapmap]
rs6571786	1.00[CEU][hapmap]
rs6571788	1.00[CEU][hapmap]
rs7142723	0.82[EUR][1000 genomes]
rs7151524	1.00[CEU][hapmap]
rs7159967	0.82[EUR][1000 genomes]
rs725243	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs8005564	0.82[CEU][hapmap]
rs8009630	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs8012664	1.00[CEU][hapmap]
rs8014610	0.82[EUR][1000 genomes]
rs8017826	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8019489	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1036201	chr14:37498841-37542041	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037719	chr14:37498841-37546359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526786	chr14:37499904-37537352	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1048854	chr14:37505438-37546359	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37525800-37527200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr14:37525800-37527200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr14:37526000-37527200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:37526000-37529000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:37526400-37529000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr14:37526400-37529200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:37526400-37529200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:37526400-37530000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:37526600-37529000	Weak transcription	Fetal Heart	heart
10	chr14:37526600-37529600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr14:37526600-37529800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:37526600-37530200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:37526800-37528800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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