Variant report

Variant	rs9762349
Chromosome Location	chr4:87649003-87649004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10016074	0.83[AFR][1000 genomes]
rs10028791	0.86[AFR][1000 genomes]
rs10033679	0.80[AFR][1000 genomes]
rs12331502	0.85[AFR][1000 genomes]
rs28769973	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71605615	0.80[AFR][1000 genomes]
rs7660864	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7664860	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2757071	chr4:87417291-87689533	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759264	chr4:87417291-87689533	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv830001	chr4:87585278-87748643	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv508296	chr4:87636350-87667372	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv999120	chr4:87646090-87653014	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv3467931	chr4:87646378-87651948	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	esv3467932	chr4:87646392-87651948	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87592400-87656400	Weak transcription	Adipose Nuclei	Adipose
2	chr4:87594400-87659800	Weak transcription	Ovary	ovary
3	chr4:87595200-87651200	Weak transcription	Fetal Stomach	stomach
4	chr4:87625200-87651600	Weak transcription	Esophagus	oesophagus
5	chr4:87631200-87712200	Weak transcription	Aorta	Aorta
6	chr4:87635200-87737400	Weak transcription	Fetal Brain Male	brain
7	chr4:87635600-87651600	Weak transcription	Lung	lung
8	chr4:87636400-87683800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:87637200-87661200	Weak transcription	Pancreas	Pancrea
10	chr4:87639200-87688000	Weak transcription	Fetal Intestine Large	intestine
11	chr4:87639400-87739200	Weak transcription	A549	lung
12	chr4:87640200-87652000	Weak transcription	HMEC	breast
13	chr4:87641600-87660400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:87641800-87683400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:87642000-87651200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:87642000-87651600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:87642000-87651600	Weak transcription	Gastric	stomach
18	chr4:87642000-87655200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:87642000-87661000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:87642200-87692600	Weak transcription	NH-A	brain
21	chr4:87642400-87735800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr4:87642600-87650800	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:87642600-87661000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr4:87642600-87661200	Weak transcription	Brain Germinal Matrix	brain
25	chr4:87642600-87692400	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:87642600-87697600	Weak transcription	Brain Angular Gyrus	brain
27	chr4:87642600-87719200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr4:87642800-87652200	Weak transcription	Brain Substantia Nigra	brain
29	chr4:87644400-87661200	Weak transcription	Osteobl	bone
30	chr4:87644600-87651400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:87644600-87651400	Weak transcription	Fetal Lung	lung
32	chr4:87644600-87651600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:87644600-87656400	Weak transcription	Brain Anterior Caudate	brain
34	chr4:87644600-87660200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr4:87644600-87661000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr4:87644600-87680600	Weak transcription	NHLF	lung
37	chr4:87644800-87651400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:87644800-87651600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr4:87644800-87651600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:87644800-87651600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr4:87644800-87651600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr4:87644800-87651600	Weak transcription	Fetal Intestine Small	intestine
43	chr4:87644800-87655800	Weak transcription	NHEK	skin
44	chr4:87644800-87659800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr4:87644800-87660000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr4:87644800-87661000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr4:87645000-87651800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:87645000-87652200	Weak transcription	Fetal Kidney	kidney
49	chr4:87645000-87655800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr4:87645000-87659400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links