Variant report

Variant	rs976354
Chromosome Location	chr13:76477152-76477153
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11149001	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12427799	0.86[ASN][1000 genomes]
rs2120062	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2120063	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2120065	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4885364	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7992520	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7994467	0.82[EUR][1000 genomes]
rs9530485	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9544072	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76464600-76478200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:76466400-76477800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:76475400-76477400	Enhancers	Fetal Heart	heart
4	chr13:76475800-76477400	Enhancers	Psoas Muscle	Psoas
5	chr13:76476000-76477200	Enhancers	Stomach Smooth Muscle	stomach
6	chr13:76476000-76477400	Enhancers	Aorta	Aorta
7	chr13:76476200-76477200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr13:76476400-76481000	Weak transcription	Fetal Muscle Leg	muscle
9	chr13:76476400-76481000	Weak transcription	Fetal Stomach	stomach
10	chr13:76476600-76482000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr13:76476600-76482200	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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