Variant report

Variant	rs978253
Chromosome Location	chr8:63010716-63010717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:63008246..63010935-chr8:63011772..63014314,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10092163	0.94[ASN][1000 genomes]
rs10096181	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10111776	0.87[EUR][1000 genomes]
rs1400499	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1516996	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1516998	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1516999	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1607124	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1607126	0.87[EUR][1000 genomes]
rs168252	0.81[EUR][1000 genomes]
rs1850369	0.87[EUR][1000 genomes]
rs1966106	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs344200	0.83[EUR][1000 genomes]
rs344203	0.83[EUR][1000 genomes]
rs344204	0.80[EUR][1000 genomes]
rs344207	0.83[EUR][1000 genomes]
rs344209	0.83[EUR][1000 genomes]
rs344210	0.83[EUR][1000 genomes]
rs344248	0.80[EUR][1000 genomes]
rs344251	0.83[EUR][1000 genomes]
rs344252	0.81[EUR][1000 genomes]
rs344254	0.83[EUR][1000 genomes]
rs344270	0.83[EUR][1000 genomes]
rs344272	0.81[EUR][1000 genomes]
rs344273	0.83[EUR][1000 genomes]
rs344274	0.83[EUR][1000 genomes]
rs35594910	0.87[EUR][1000 genomes]
rs4348484	0.94[ASN][1000 genomes]
rs4352846	0.94[ASN][1000 genomes]
rs58587861	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59496972	0.91[EUR][1000 genomes]
rs60173182	0.91[EUR][1000 genomes]
rs60415651	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62135	0.83[EUR][1000 genomes]
rs679344	0.83[EUR][1000 genomes]
rs681078	0.83[EUR][1000 genomes]
rs73263080	0.91[EUR][1000 genomes]
rs7817852	0.91[EUR][1000 genomes]
rs7821502	0.87[EUR][1000 genomes]
rs7833161	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890954	chr8:62919691-63023132	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv890955	chr8:62919691-63062581	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1032321	chr8:62954064-63026567	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63009600-63013600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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