Variant report

Variant	rs978439
Chromosome Location	chr8:34228681-34228682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1014494	0.82[ASN][1000 genomes]
rs1014495	0.82[ASN][1000 genomes]
rs13274419	0.82[ASN][1000 genomes]
rs1551654	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881977	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168962	0.86[EUR][1000 genomes]
rs2590454	0.82[ASN][1000 genomes]
rs2590461	0.89[ASN][1000 genomes]
rs2590462	0.89[ASN][1000 genomes]
rs2590465	0.89[ASN][1000 genomes]
rs2590466	0.89[ASN][1000 genomes]
rs2590467	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590468	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590476	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609600	0.89[ASN][1000 genomes]
rs2609603	0.82[ASN][1000 genomes]
rs2609610	0.82[ASN][1000 genomes]
rs2609614	0.82[ASN][1000 genomes]
rs2609617	0.82[ASN][1000 genomes]
rs2609618	0.82[ASN][1000 genomes]
rs2609627	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609649	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609650	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2609651	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609654	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2719272	0.92[AFR][1000 genomes]
rs2719277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719278	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719288	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719299	0.89[ASN][1000 genomes]
rs2719300	0.89[ASN][1000 genomes]
rs2719305	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719310	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719311	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2719312	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719315	0.82[ASN][1000 genomes]
rs2719316	0.82[ASN][1000 genomes]
rs2719329	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953927	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953928	0.96[ASN][1000 genomes]
rs2953930	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953931	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953932	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953935	0.82[AFR][1000 genomes]
rs2959322	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2978835	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2978837	0.82[AFR][1000 genomes]
rs4327859	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4739544	0.82[AFR][1000 genomes]
rs6987252	0.89[EUR][1000 genomes]
rs6988455	0.82[ASN][1000 genomes]
rs978438	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs981752	0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs978439	FGFR1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34227400-34230800	Enhancers	Fetal Intestine Large	intestine
2	chr8:34228000-34230600	Enhancers	Fetal Intestine Small	intestine
3	chr8:34228200-34229400	Enhancers	Brain Germinal Matrix	brain
4	chr8:34228400-34229000	Active TSS	Pancreatic Islets	Pancreatic Islet

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