Variant report

Variant	rs9787791
Chromosome Location	chr11:93696885-93696886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10501813	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1113700	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11825709	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1401184	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1589166	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1607401	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1894165	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2102857	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2176563	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2203793	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2213110	1.00[EUR][1000 genomes]
rs2460047	0.88[EUR][1000 genomes]
rs2460053	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2460065	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2460070	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2462733	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2462735	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2462756	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2462758	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2462760	1.00[EUR][1000 genomes]
rs2511411	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56938392	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57106172	0.84[ASN][1000 genomes]
rs57214110	0.85[AMR][1000 genomes]
rs57367718	0.85[AMR][1000 genomes]
rs57586533	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59013509	0.88[EUR][1000 genomes]
rs59689949	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59793398	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60539088	1.00[EUR][1000 genomes]
rs61463513	0.85[AMR][1000 genomes]
rs66480929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66514329	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66523751	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66538341	0.94[EUR][1000 genomes]
rs66650995	1.00[EUR][1000 genomes]
rs66918645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66977226	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67001808	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67243356	0.94[EUR][1000 genomes]
rs67412659	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67926172	1.00[EUR][1000 genomes]
rs67988338	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68019383	0.88[EUR][1000 genomes]
rs72962832	0.85[AMR][1000 genomes]
rs72964631	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72964645	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72964666	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73564796	0.83[ASN][1000 genomes]
rs73564799	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs978777	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs989088	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:46 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv442	chr11:93665117-93717973	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2757466	chr11:93676224-93714950	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759854	chr11:93676224-93714950	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2760207	chr11:93692312-93701588	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3474853	chr11:93693504-93698702	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3474864	chr11:93693504-93698702	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3495079	chr11:93694004-93703302	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3495078	chr11:93694454-93703152	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2511618	chr11:93694604-93702872	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv8864	chr11:93694672-93702559	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1819337	chr11:93694753-93702531	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv2590394	chr11:93695003-93702250	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv2333689	chr11:93695030-93702267	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1816263	chr11:93695035-93701343	Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv1818695	chr11:93695035-93702205	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3464653	chr11:93695081-93702187	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3495076	chr11:93695102-93702167	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3495077	chr11:93695105-93702131	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3495080	chr11:93695133-93702127	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3464631	chr11:93695137-93702153	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3464675	chr11:93695137-93702159	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3464642	chr11:93695155-93702115	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv826040	chr11:93695199-93702072	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3464664	chr11:93695207-93702089	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3495081	chr11:93695217-93702088	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv498768	chr11:93695220-93702086	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv3464686	chr11:93695221-93702086	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv3495082	chr11:93695221-93702086	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv1817926	chr11:93695235-93701144	Bivalent Enhancer Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv1821420	chr11:93695235-93703637	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv826041	chr11:93695241-93702019	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv19664	chr11:93695267-93702056	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
35	esv1816641	chr11:93695311-93702069	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
36	esv1817515	chr11:93695311-93702069	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
37	esv1818710	chr11:93695311-93702069	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
38	esv1819122	chr11:93695311-93702069	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
39	esv1821766	chr11:93695311-93702069	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
40	esv1819218	chr11:93695311-93702435	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
41	esv1822151	chr11:93695311-93702435	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
42	esv1822360	chr11:93695311-93702435	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
43	nsv514641	chr11:93695496-93701952	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
44	nsv983209	chr11:93695606-93702578	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
45	nsv826043	chr11:93695761-93702019	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
46	nsv826044	chr11:93695761-93702072	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93695600-93697000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:93696800-93697000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links