Variant report

Variant	rs9791221
Chromosome Location	chr6:150438477-150438478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2343533	0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4869827	0.97[ASN][1000 genomes]
rs4870300	0.95[ASN][1000 genomes]
rs57363122	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60169056	0.95[ASN][1000 genomes]
rs61621249	0.83[ASN][1000 genomes]
rs736065	0.97[ASN][1000 genomes]
rs9479683	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150437200-150440000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:150437400-150439800	Weak transcription	Right Atrium	heart
3	chr6:150437800-150439600	Weak transcription	Esophagus	oesophagus
4	chr6:150437800-150440000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:150438000-150439400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:150438000-150439400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:150438000-150439400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:150438000-150440200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:150438200-150439400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:150438200-150439800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:150438200-150440200	Weak transcription	Brain Substantia Nigra	brain
12	chr6:150438400-150441000	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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