Variant report

Variant	rs9791634
Chromosome Location	chr7:138189604-138189605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138185727..138188937-chr7:138189429..138192088,3	K562	blood:
2	chr7:138178116..138180071-chr7:138187810..138190378,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10155993	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10215281	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10227693	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10247380	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10248731	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1077772	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11976614	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1363053	0.85[JPT][hapmap]
rs1421604	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1544733	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1673203	0.96[CHB][hapmap];0.86[JPT][hapmap]
rs1673204	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1673205	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1673206	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs17364560	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs17461551	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1813003	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1874326	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2353354	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs2353355	0.81[CEU][hapmap];0.84[YRI][hapmap]
rs3778705	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs3807155	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3807156	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3807157	0.96[CHB][hapmap];0.90[JPT][hapmap]
rs6467778	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6467780	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6467782	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6467783	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6948094	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6954285	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6959574	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6963539	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs749546	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs9791462	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs985299	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138157600-138191400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:138161800-138195800	Weak transcription	Fetal Brain Female	brain
3	chr7:138164000-138191400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:138164000-138199800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:138165000-138192000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:138168000-138196200	Weak transcription	Left Ventricle	heart
7	chr7:138169000-138190200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr7:138175200-138201200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr7:138176600-138190200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:138176600-138203600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr7:138177000-138189800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr7:138177000-138190200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:138177000-138212600	Weak transcription	Pancreas	Pancrea
14	chr7:138177600-138194600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:138178600-138191400	Weak transcription	Right Atrium	heart
16	chr7:138178600-138212200	Weak transcription	NHLF	lung
17	chr7:138180200-138204200	Weak transcription	Brain Substantia Nigra	brain
18	chr7:138182200-138196200	Weak transcription	Spleen	Spleen
19	chr7:138183000-138196400	Weak transcription	Fetal Lung	lung
20	chr7:138183000-138203600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:138184400-138190200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:138184400-138194600	Weak transcription	Gastric	stomach
23	chr7:138184400-138196200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:138184400-138196200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr7:138184400-138196400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:138184400-138196400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr7:138184400-138197000	Weak transcription	Aorta	Aorta
28	chr7:138184400-138198600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr7:138184600-138190000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr7:138184600-138190400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr7:138184600-138191400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr7:138184600-138191400	Weak transcription	Stomach Mucosa	stomach
33	chr7:138184600-138194600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:138184600-138196800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr7:138184800-138196200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr7:138184800-138204000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:138185000-138190000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:138185000-138191400	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr7:138185000-138194800	Weak transcription	GM12878-XiMat	blood
40	chr7:138185000-138198600	Weak transcription	Fetal Heart	heart
41	chr7:138186000-138196200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr7:138186600-138210400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr7:138187200-138190200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr7:138187200-138196400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr7:138187200-138196400	Weak transcription	Brain Hippocampus Middle	brain
46	chr7:138187400-138192000	Weak transcription	Ovary	ovary
47	chr7:138187400-138196200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr7:138187400-138197000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr7:138187400-138203800	Weak transcription	Psoas Muscle	Psoas
50	chr7:138187600-138194800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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