Variant report

Variant	rs9792493
Chromosome Location	chr9:72443953-72443954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72443896..72446419-chr9:72448241..72450702,2	MCF-7	breast:
2	chr9:72433968..72436412-chr9:72443051..72445385,2	K562	blood:
3	chr9:72440634..72442865-chr9:72442939..72445478,2	K562	blood:
4	chr9:72436123..72439031-chr9:72442805..72445416,2	K562	blood:

Variant related genes	Relation type
ENSG00000225626	Chromatin interaction
ENSG00000204711	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1004487	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs10123781	0.86[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs10283871	0.85[ASN][1000 genomes]
rs10780678	0.97[ASN][1000 genomes]
rs10868150	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140334	0.83[ASN][1000 genomes]
rs11140360	0.88[ASN][1000 genomes]
rs11140362	0.88[ASN][1000 genomes]
rs11140368	0.88[ASN][1000 genomes]
rs11140527	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140621	0.98[ASN][1000 genomes]
rs11140722	0.93[CEU][hapmap]
rs11791776	0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs11792259	0.86[CEU][hapmap]
rs11793213	0.81[ASN][1000 genomes]
rs11793793	0.86[ASN][1000 genomes]
rs12235751	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17085361	0.82[ASN][1000 genomes]
rs2150048	0.88[ASN][1000 genomes]
rs2183380	0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs2282070	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3949763	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs4458931	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744941	0.91[ASN][1000 genomes]
rs60429826	0.84[ASN][1000 genomes]
rs7023103	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042897	0.86[CEU][hapmap]
rs72723210	0.91[ASN][1000 genomes]
rs72723211	0.91[ASN][1000 genomes]
rs7869694	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72437400-72444400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:72439000-72444400	Weak transcription	K562	blood
3	chr9:72440000-72451400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:72440200-72444200	Enhancers	Primary T cells from cord blood	blood
5	chr9:72440600-72444400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:72440600-72457600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:72441000-72444800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:72441400-72444000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr9:72441400-72444000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr9:72441400-72444600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr9:72441400-72446400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:72441600-72467200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:72441800-72446400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:72441800-72446400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:72442600-72446400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:72442600-72446400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr9:72442600-72446400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr9:72442800-72444200	Weak transcription	Esophagus	oesophagus
19	chr9:72442800-72457600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:72442800-72480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:72443600-72444800	Weak transcription	Fetal Thymus	thymus
22	chr9:72443800-72444000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:72443800-72444000	Weak transcription	Osteobl	bone
24	chr9:72443800-72444600	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr9:72443800-72444600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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