Variant report

Variant	rs9793695
Chromosome Location	chr1:215346929-215346930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10127656	0.87[ASN][1000 genomes]
rs10779639	0.88[ASN][1000 genomes]
rs10779640	0.87[ASN][1000 genomes]
rs10779644	0.91[ASN][1000 genomes]
rs10779645	0.91[ASN][1000 genomes]
rs10779646	0.91[ASN][1000 genomes]
rs10779647	0.91[ASN][1000 genomes]
rs10779648	0.89[ASN][1000 genomes]
rs10864153	0.87[ASN][1000 genomes]
rs10864154	0.87[ASN][1000 genomes]
rs10864158	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11120496	0.89[ASN][1000 genomes]
rs11120498	0.89[ASN][1000 genomes]
rs11120499	0.88[ASN][1000 genomes]
rs11120506	0.91[ASN][1000 genomes]
rs11120508	0.91[ASN][1000 genomes]
rs11120511	0.91[ASN][1000 genomes]
rs11120513	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11120516	0.91[ASN][1000 genomes]
rs11120517	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12031308	0.91[ASN][1000 genomes]
rs12061916	0.89[ASN][1000 genomes]
rs12068734	0.91[ASN][1000 genomes]
rs12120091	0.89[ASN][1000 genomes]
rs12121761	0.88[ASN][1000 genomes]
rs12143339	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12742137	0.87[ASN][1000 genomes]
rs1339405	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1339406	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2363554	0.91[ASN][1000 genomes]
rs2363564	0.87[ASN][1000 genomes]
rs2363565	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2885812	0.91[ASN][1000 genomes]
rs2885815	0.86[ASN][1000 genomes]
rs3931584	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4394614	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4411107	0.89[ASN][1000 genomes]
rs4428856	0.89[ASN][1000 genomes]
rs4440833	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4497183	0.91[ASN][1000 genomes]
rs4509552	0.91[ASN][1000 genomes]
rs4509553	0.89[ASN][1000 genomes]
rs4531266	0.87[ASN][1000 genomes]
rs4571941	0.84[ASN][1000 genomes]
rs4573492	0.89[ASN][1000 genomes]
rs4655276	0.91[ASN][1000 genomes]
rs4655391	0.91[ASN][1000 genomes]
rs4655392	0.91[ASN][1000 genomes]
rs4655394	0.85[AMR][1000 genomes]
rs6666828	0.89[ASN][1000 genomes]
rs6667764	0.87[ASN][1000 genomes]
rs6672978	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6683041	0.89[ASN][1000 genomes]
rs6695343	0.85[AMR][1000 genomes]
rs7417100	0.91[ASN][1000 genomes]
rs7513709	0.87[ASN][1000 genomes]
rs7541543	0.87[ASN][1000 genomes]
rs7547572	0.85[AMR][1000 genomes]
rs7549136	0.89[ASN][1000 genomes]
rs7551415	0.87[ASN][1000 genomes]
rs9793382	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215340800-215355000	Weak transcription	Osteobl	bone
2	chr1:215342200-215351800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:215343800-215349600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:215346000-215348400	Weak transcription	NHDF-Ad	bronchial
5	chr1:215346000-215352000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:215346200-215349000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links