Variant report

Variant	rs979494
Chromosome Location	chr14:33043315-33043316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33040924..33044247-chr14:33045114..33047639,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10138218	0.83[ASN][1000 genomes]
rs10735738	0.82[ASN][1000 genomes]
rs11156754	0.82[ASN][1000 genomes]
rs11626569	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11626762	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12432041	0.84[YRI][hapmap]
rs12435734	0.82[YRI][hapmap]
rs12717222	0.86[ASN][1000 genomes]
rs17099309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17099320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17099324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17099326	1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs1956209	0.82[YRI][hapmap]
rs1956212	0.82[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1956219	0.83[ASN][1000 genomes]
rs3784203	0.82[ASN][1000 genomes]
rs4981992	0.82[ASN][1000 genomes]
rs4981993	0.82[ASN][1000 genomes]
rs61981363	0.86[ASN][1000 genomes]
rs61983021	0.96[ASN][1000 genomes]
rs6571540	0.83[ASN][1000 genomes]
rs6571541	0.82[ASN][1000 genomes]
rs7146517	0.86[ASN][1000 genomes]
rs7154753	0.86[ASN][1000 genomes]
rs7157328	0.83[ASN][1000 genomes]
rs7157533	0.83[ASN][1000 genomes]
rs7157744	0.83[ASN][1000 genomes]
rs7160156	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs73255099	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8017249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33034400-33058200	Weak transcription	Psoas Muscle	Psoas
2	chr14:33035000-33045600	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:33035000-33045600	Weak transcription	HSMMtube	muscle
4	chr14:33035400-33062600	Weak transcription	Aorta	Aorta
5	chr14:33037000-33045600	Weak transcription	Brain Angular Gyrus	brain
6	chr14:33037600-33045600	Weak transcription	Brain Anterior Caudate	brain
7	chr14:33041000-33045800	Weak transcription	Brain Germinal Matrix	brain
8	chr14:33042200-33045000	Weak transcription	Brain Substantia Nigra	brain
9	chr14:33042200-33045600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr14:33042200-33045600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr14:33042400-33043600	Enhancers	Fetal Intestine Large	intestine
12	chr14:33042400-33043600	Enhancers	Fetal Intestine Small	intestine
13	chr14:33042400-33045000	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:33042400-33045600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:33042400-33045600	Weak transcription	Brain Hippocampus Middle	brain
16	chr14:33042400-33045600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr14:33042400-33045600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:33042400-33045600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr14:33042400-33045600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr14:33042400-33045600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr14:33042400-33045600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr14:33042400-33046000	Weak transcription	Right Ventricle	heart
23	chr14:33042400-33047000	Weak transcription	GM12878-XiMat	blood
24	chr14:33042400-33053400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr14:33042400-33058200	Weak transcription	Left Ventricle	heart
26	chr14:33042600-33045600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr14:33042600-33045600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr14:33042600-33045600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr14:33042600-33046000	Enhancers	Liver	Liver
30	chr14:33043200-33043400	Enhancers	Fetal Heart	heart
31	chr14:33043200-33045600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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