Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143360196..143364725-chr4:143377583..143382490,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10011782	0.84[MEX][hapmap]
rs10012476	1.00[CEU][hapmap]
rs10015271	0.81[EUR][1000 genomes]
rs1013397	1.00[CEU][hapmap];0.83[CHD][hapmap]
rs12643136	0.87[CEU][hapmap]
rs12644565	1.00[CEU][hapmap]
rs12646243	0.87[CEU][hapmap]
rs12649139	0.87[CEU][hapmap]
rs1364917	0.87[CEU][hapmap]
rs1364918	0.87[CEU][hapmap]
rs1364919	0.87[CEU][hapmap]
rs1364920	0.87[CEU][hapmap]
rs1364926	0.87[CEU][hapmap]
rs1391099	0.84[MEX][hapmap]
rs1425531	0.84[MEX][hapmap]
rs1425534	0.87[CEU][hapmap]
rs1425535	0.87[CEU][hapmap]
rs1425538	0.87[CEU][hapmap]
rs1489581	0.81[CHD][hapmap];0.84[MEX][hapmap]
rs1603584	0.90[EUR][1000 genomes]
rs17016163	0.84[MEX][hapmap]
rs17016170	1.00[CEU][hapmap]
rs17016175	0.84[MEX][hapmap]
rs17016207	0.87[CEU][hapmap];0.81[CHD][hapmap]
rs17016248	0.87[CEU][hapmap]
rs17016304	0.87[CEU][hapmap]
rs1817970	0.81[ASN][1000 genomes]
rs2322705	1.00[CEU][hapmap]
rs3913163	0.84[MEX][hapmap]
rs3913164	1.00[CEU][hapmap]
rs4345256	1.00[CEU][hapmap]
rs67960473	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822263	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662794	0.82[CHB][hapmap]
rs7668133	1.00[CEU][hapmap]
rs7687147	0.82[ASN][1000 genomes]
rs7695918	1.00[CEU][hapmap]
rs9308152	1.00[CEU][hapmap]
rs931637	0.85[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9986090	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv830100	chr4:143216951-143393305	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143338600-143366600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143351200-143364800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:143351200-143371200	Weak transcription	Pancreas	Pancrea
4	chr4:143355600-143361400	Weak transcription	Gastric	stomach
5	chr4:143355800-143367600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr4:143357200-143365600	Weak transcription	Thymus	Thymus
7	chr4:143357400-143371200	Weak transcription	Aorta	Aorta
8	chr4:143357600-143367800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:143360800-143361000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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