Variant report

Variant	rs979901
Chromosome Location	chr2:180469778-180469779
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180466180..180468206-chr2:180468630..180471085,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10048645	0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs10169561	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10189808	0.81[AFR][1000 genomes]
rs1115013	0.84[ASN][1000 genomes]
rs11683314	0.81[CEU][hapmap]
rs11687634	0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs11692794	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11889907	0.84[ASN][1000 genomes]
rs12693196	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs12693197	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13000027	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13000183	0.81[CEU][hapmap]
rs13000199	0.95[JPT][hapmap]
rs13004211	0.80[JPT][hapmap]
rs13012946	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13021168	0.84[ASN][1000 genomes]
rs13022986	0.84[ASN][1000 genomes]
rs13026689	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs13035781	0.91[JPT][hapmap]
rs13411084	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs13411180	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs1356069	0.82[JPT][hapmap]
rs1515315	0.91[JPT][hapmap]
rs1515317	0.91[JPT][hapmap]
rs1533385	0.86[JPT][hapmap]
rs1554101	0.90[JPT][hapmap]
rs1581175	0.84[ASN][1000 genomes]
rs1606814	0.84[ASN][1000 genomes]
rs1606816	0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs16866810	0.90[JPT][hapmap]
rs16866815	0.81[CHB][hapmap]
rs16866822	0.84[CHB][hapmap]
rs16866832	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs16866842	0.84[CHB][hapmap]
rs16866850	0.81[CHB][hapmap]
rs16866857	0.91[JPT][hapmap]
rs16866865	0.81[JPT][hapmap]
rs16866871	0.81[JPT][hapmap]
rs17767681	0.85[CEU][hapmap]
rs17818050	0.90[JPT][hapmap]
rs1877943	0.91[JPT][hapmap]
rs2138195	0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2176061	0.91[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs2222031	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs2887110	0.84[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap]
rs3106712	0.91[JPT][hapmap]
rs3106713	0.90[JPT][hapmap]
rs3106714	0.90[JPT][hapmap]
rs4511690	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4894113	0.84[ASN][1000 genomes]
rs4894115	0.90[JPT][hapmap]
rs56219418	0.84[ASN][1000 genomes]
rs6717795	0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs6728581	0.94[ASN][1000 genomes]
rs7425514	0.81[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs7558351	0.91[JPT][hapmap]
rs7593595	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs7601398	0.91[JPT][hapmap]
rs872158	0.85[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs872159	0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs872160	0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs951425	0.90[JPT][hapmap]
rs988288	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988289	0.81[AFR][1000 genomes]
rs988290	0.81[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875471	chr2:180448523-180469778	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180461400-180470400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:180467600-180472000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180468600-180471800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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