Variant report

Variant	rs9799529
Chromosome Location	chr4:87870709-87870710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10516786	0.82[JPT][hapmap]
rs17012200	0.82[JPT][hapmap]
rs17752307	0.84[JPT][hapmap]
rs767315	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1009937	chr4:87795314-88008345	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv999176	chr4:87869996-88098136	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv998335	chr4:87869996-88104414	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87857600-87882000	Weak transcription	Spleen	Spleen
2	chr4:87857800-87880200	Weak transcription	HSMM	muscle
3	chr4:87858600-87881000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:87861000-87878000	Weak transcription	HMEC	breast
5	chr4:87861400-87877200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:87861400-87880800	Weak transcription	Aorta	Aorta
7	chr4:87861800-87871600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:87861800-87871600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:87861800-87878000	Weak transcription	Osteobl	bone
10	chr4:87861800-87880000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:87861800-87880600	Weak transcription	Fetal Kidney	kidney
12	chr4:87862400-87871200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:87863400-87871600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:87863600-87871800	Weak transcription	NHDF-Ad	bronchial
15	chr4:87864000-87871800	Weak transcription	NHEK	skin
16	chr4:87864000-87878000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr4:87864400-87871800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:87864400-87871800	Weak transcription	Fetal Intestine Large	intestine
19	chr4:87864400-87874400	Weak transcription	Liver	Liver
20	chr4:87864400-87880600	Weak transcription	Gastric	stomach
21	chr4:87864400-87880800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr4:87864600-87874400	Weak transcription	Hela-S3	cervix
23	chr4:87865800-87871000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:87866400-87871600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:87866400-87871800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:87866400-87877000	Weak transcription	A549	lung
27	chr4:87867400-87870800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:87867400-87874200	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr4:87868200-87871000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr4:87868200-87880600	Weak transcription	Lung	lung
31	chr4:87868200-87881200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr4:87868400-87871000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr4:87868400-87871000	Weak transcription	Ovary	ovary
34	chr4:87868400-87871400	Weak transcription	Fetal Brain Male	brain
35	chr4:87868400-87871800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr4:87868400-87871800	Weak transcription	Left Ventricle	heart
37	chr4:87868400-87871800	Weak transcription	Psoas Muscle	Psoas
38	chr4:87868400-87871800	Weak transcription	Right Atrium	heart
39	chr4:87868400-87878200	Weak transcription	Primary B cells from cord blood	blood
40	chr4:87868400-87880000	Weak transcription	Thymus	Thymus
41	chr4:87868400-87880800	Weak transcription	Pancreas	Pancrea
42	chr4:87868400-87881400	Weak transcription	Colonic Mucosa	Colon
43	chr4:87868400-87891800	Weak transcription	Esophagus	oesophagus
44	chr4:87868600-87871800	Weak transcription	Primary B cells from peripheral blood	blood
45	chr4:87868600-87871800	Weak transcription	Fetal Thymus	thymus
46	chr4:87868600-87871800	Weak transcription	Right Ventricle	heart
47	chr4:87868600-87871800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr4:87868600-87878400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr4:87868600-87886800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr4:87868600-87898000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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