Variant report

Variant	rs9803643
Chromosome Location	chr1:216989023-216989024
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1361331	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1946752	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7554053	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216983200-216989200	Weak transcription	Gastric	stomach
2	chr1:216986400-216989600	Enhancers	Fetal Muscle Leg	muscle
3	chr1:216987000-216991000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:216987400-216989600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:216987600-216989200	Weak transcription	Psoas Muscle	Psoas
6	chr1:216987600-216989800	Enhancers	Fetal Kidney	kidney
7	chr1:216987600-216992400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:216987800-216989200	Enhancers	Fetal Lung	lung
9	chr1:216988000-216997200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:216988200-216989600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:216988200-216989600	Enhancers	HSMMtube	muscle
12	chr1:216988400-216989600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr1:216988400-216989600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr1:216988400-216989600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:216988400-216989600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr1:216988400-216989600	Enhancers	Fetal Intestine Small	intestine
17	chr1:216988400-216989600	Enhancers	Fetal Stomach	stomach
18	chr1:216988400-216989800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr1:216988600-216989200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr1:216988600-216989200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr1:216988600-216989200	Enhancers	Fetal Muscle Trunk	muscle
22	chr1:216988600-216989400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:216988600-216989400	Enhancers	Right Atrium	heart
24	chr1:216988600-216989600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:216988600-216989600	Enhancers	Muscle Satellite Cultured Cells	--
26	chr1:216988600-216989600	Enhancers	Fetal Brain Female	brain
27	chr1:216988600-216990000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr1:216988800-216989200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr1:216988800-216989200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr1:216988800-216989200	Active TSS	Brain Angular Gyrus	brain
31	chr1:216988800-216989200	Active TSS	Brain Anterior Caudate	brain
32	chr1:216988800-216989400	Enhancers	H9 Cell Line	embryonic stem cell
33	chr1:216988800-216989400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr1:216988800-216989400	Active TSS	Brain Substantia Nigra	brain
35	chr1:216988800-216989400	Enhancers	Fetal Brain Male	brain
36	chr1:216988800-216989600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr1:216988800-216989600	Enhancers	Small Intestine	intestine
38	chr1:216988800-216989600	Enhancers	HSMM	muscle
39	chr1:216989000-216989200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:216989000-216989200	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr1:216989000-216989400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr1:216989000-216989400	Flanking Active TSS	Brain Cingulate Gyrus	brain
43	chr1:216989000-216989400	Flanking Active TSS	Brain Germinal Matrix	brain
44	chr1:216989000-216989400	Active TSS	Brain Hippocampus Middle	brain
45	chr1:216989000-216989400	Enhancers	Fetal Heart	heart
46	chr1:216989000-216989400	Active TSS	Stomach Smooth Muscle	stomach
47	chr1:216989000-216989600	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr1:216989000-216989600	Enhancers	Duodenum Mucosa	Duodenum
49	chr1:216989000-216989600	Enhancers	Fetal Intestine Large	intestine
50	chr1:216989000-216989600	Enhancers	Skeletal Muscle Male	skeletal muscle

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