Variant report

Variant	rs9804759
Chromosome Location	chr12:50890301-50890302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10735826	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10783367	0.90[ASN][1000 genomes]
rs10783368	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10876041	0.92[ASN][1000 genomes]
rs10876044	0.92[ASN][1000 genomes]
rs10876048	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10876054	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10876057	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11614911	0.92[ASN][1000 genomes]
rs12099615	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12296379	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12320201	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12817256	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13328926	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1402693	0.87[EUR][1000 genomes]
rs1521515	0.82[EUR][1000 genomes]
rs1521517	0.91[EUR][1000 genomes]
rs1815010	0.82[EUR][1000 genomes]
rs1996750	0.87[EUR][1000 genomes]
rs2246840	0.82[EUR][1000 genomes]
rs2252595	0.87[EUR][1000 genomes]
rs2684886	0.82[EUR][1000 genomes]
rs2684890	0.82[EUR][1000 genomes]
rs2684891	0.82[EUR][1000 genomes]
rs2684902	0.91[EUR][1000 genomes]
rs2684906	0.91[EUR][1000 genomes]
rs2700486	0.82[EUR][1000 genomes]
rs28414775	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28479152	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2947617	0.91[EUR][1000 genomes]
rs4129355	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4306347	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4517607	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768848	0.90[ASN][1000 genomes]
rs4768885	0.92[ASN][1000 genomes]
rs4768886	0.92[ASN][1000 genomes]
rs4768887	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4768894	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56753963	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57512759	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58943330	0.87[EUR][1000 genomes]
rs59194948	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59683461	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60239257	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60494920	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60908906	0.87[EUR][1000 genomes]
rs7131993	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7135222	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7301125	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7302749	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7306387	0.87[EUR][1000 genomes]
rs7310507	0.87[EUR][1000 genomes]
rs7487645	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7953880	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7955310	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7957060	0.91[ASN][1000 genomes]
rs7978443	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7979184	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs939631	0.82[EUR][1000 genomes]
rs951591	0.87[EUR][1000 genomes]
rs9634264	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9738596	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820967	chr12:50856613-51002088	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50888000-50890400	Weak transcription	Liver	Liver

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