Variant report

Variant	rs9805796
Chromosome Location	chr13:111213131-111213132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:111201492..111203225-chr13:111211153..111213407,2	MCF-7	breast:
2	chr13:111211605..111215710-chr13:111363534..111368936,10	MCF-7	breast:
3	chr13:111199528..111201235-chr13:111211213..111213548,2	MCF-7	breast:
4	chr13:111212473..111215656-chr13:111365341..111368678,3	K562	blood:
5	chr13:111149836..111151933-chr13:111211909..111213452,2	K562	blood:
6	chr13:111158315..111162369-chr13:111211913..111215301,3	MCF-7	breast:
7	chr13:111159545..111161201-chr13:111212465..111215084,2	MCF-7	breast:
8	chr13:111204101..111205648-chr13:111211742..111214069,2	MCF-7	breast:
9	chr13:111211148..111213368-chr13:111243811..111245903,2	MCF-7	breast:
10	chr13:111158150..111162393-chr13:111210141..111213644,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000153487	Chromatin interaction
ENSG00000134905	Chromatin interaction
ENSG00000232814	Chromatin interaction
ENSG00000134871	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2893368	1.00[ASN][1000 genomes]
rs378859	1.00[ASN][1000 genomes]
rs395865	1.00[ASN][1000 genomes]
rs9301464	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9583510	1.00[ASN][1000 genomes]
rs9588193	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv832720	chr13:111100235-111295993	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1046291	chr13:111125747-111257861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1045143	chr13:111126822-111242791	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1044234	chr13:111143053-111370580	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	216 gene(s)	inside rSNPs	diseases
6	nsv949634	chr13:111151460-111582996	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
7	nsv901010	chr13:111165390-111286592	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv1053922	chr13:111167764-111330876	Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv1043849	chr13:111167764-111340418	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv541924	chr13:111167764-111340418	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv1036160	chr13:111167764-111347308	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	nsv541925	chr13:111167764-111347308	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv901011	chr13:111168951-111280002	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111208600-111213200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr13:111211200-111213400	Flanking Active TSS	Adipose Nuclei	Adipose
3	chr13:111211400-111213600	Flanking Active TSS	Stomach Smooth Muscle	stomach
4	chr13:111211400-111213600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr13:111211600-111213200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:111211600-111213400	Active TSS	Brain Hippocampus Middle	brain
7	chr13:111211600-111213600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:111211600-111214800	Active TSS	Brain Substantia Nigra	brain
9	chr13:111211600-111215000	Active TSS	Aorta	Aorta
10	chr13:111211600-111215000	Active TSS	Brain Anterior Caudate	brain
11	chr13:111211600-111215600	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr13:111211800-111213200	Active TSS	Placenta	Placenta
13	chr13:111211800-111213200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr13:111211800-111213600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:111211800-111213600	Flanking Active TSS	Osteobl	bone
16	chr13:111211800-111213800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr13:111211800-111213800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr13:111211800-111215400	Active TSS	Stomach Mucosa	stomach
19	chr13:111212000-111213400	Active TSS	Brain Cingulate Gyrus	brain
20	chr13:111212000-111213400	Active TSS	Lung	lung
21	chr13:111212000-111214800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr13:111212000-111215000	Active TSS	Fetal Intestine Large	intestine
23	chr13:111212000-111215000	Active TSS	NHLF	lung
24	chr13:111212000-111215200	Active TSS	HSMM	muscle
25	chr13:111212000-111215400	Active TSS	Fetal Kidney	kidney
26	chr13:111212000-111215800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr13:111212200-111214800	Active TSS	GM12878-XiMat	blood
28	chr13:111212200-111215200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
29	chr13:111212200-111215200	Active TSS	Gastric	stomach
30	chr13:111212400-111213200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:111212400-111213200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr13:111212400-111213200	Bivalent/Poised TSS	Fetal Brain Male	brain
33	chr13:111212400-111213200	Weak transcription	Small Intestine	intestine
34	chr13:111212400-111213200	Weak transcription	Spleen	Spleen
35	chr13:111212400-111213400	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
36	chr13:111212400-111213400	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr13:111212400-111213600	Flanking Active TSS	NHEK	skin
38	chr13:111212400-111214800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr13:111212400-111215000	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr13:111212400-111215200	Active TSS	Psoas Muscle	Psoas
41	chr13:111212400-111215200	Active TSS	Right Ventricle	heart
42	chr13:111212400-111215600	Active TSS	ES-I3 Cell Line	embryonic stem cell
43	chr13:111212600-111213200	Enhancers	Muscle Satellite Cultured Cells	--
44	chr13:111212600-111213200	Weak transcription	Esophagus	oesophagus
45	chr13:111212600-111213200	Enhancers	HSMMtube	muscle
46	chr13:111212600-111213200	Active TSS	K562	blood
47	chr13:111212600-111213400	Bivalent/Poised TSS	Primary B cells from cord blood	blood
48	chr13:111212600-111214600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr13:111212600-111214800	Active TSS	Pancreas	Pancrea
50	chr13:111212600-111214800	Active TSS	Rectal Mucosa Donor 31	rectum

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