Variant report

Variant	rs9806037
Chromosome Location	chr14:37489008-37489009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10047907	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10047908	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10129311	0.80[CHB][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10131531	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10133042	0.81[CEU][hapmap]
rs10134363	0.98[EUR][1000 genomes]
rs10136164	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10136755	0.81[CEU][hapmap]
rs10137553	0.97[EUR][1000 genomes]
rs10137595	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10137611	0.81[CEU][hapmap]
rs10140136	1.00[CEU][hapmap];0.85[GIH][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes]
rs10140373	0.85[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10148080	0.86[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10148097	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10148311	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10148351	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10148406	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10148426	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12050275	0.83[ASW][hapmap]
rs12433348	0.86[CEU][hapmap]
rs12894067	0.86[CEU][hapmap]
rs1467484	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1467485	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1467486	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1467487	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1467488	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1467489	0.86[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1467490	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1467491	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1467492	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1467493	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1555333	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1950816	0.83[ASW][hapmap];0.95[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1956422	0.86[CEU][hapmap]
rs1956425	0.81[CEU][hapmap]
rs2022584	0.83[ASW][hapmap]
rs2022726	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2057271	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2180600	0.81[CEU][hapmap]
rs2415378	0.86[CEU][hapmap]
rs28411825	0.98[EUR][1000 genomes]
rs28796569	0.98[EUR][1000 genomes]
rs28826308	0.98[EUR][1000 genomes]
rs4328351	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4408459	0.81[CEU][hapmap]
rs56113646	0.98[EUR][1000 genomes]
rs59676376	0.93[EUR][1000 genomes]
rs6571773	0.86[CEU][hapmap]
rs6571775	0.81[CEU][hapmap]
rs6571778	0.84[CEU][hapmap]
rs6571780	0.86[CEU][hapmap]
rs7141528	0.86[CEU][hapmap]
rs7142225	0.86[CEU][hapmap]
rs714268	0.86[CEU][hapmap]
rs7149490	0.81[CEU][hapmap]
rs7153530	0.86[CEU][hapmap];0.84[GIH][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7359049	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7359050	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8004339	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8005022	0.86[CEU][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8009178	0.86[CEU][hapmap]
rs8011174	0.83[ASW][hapmap];0.95[CEU][hapmap];0.81[CHB][hapmap];0.95[GIH][hapmap];0.96[LWK][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8011715	0.81[CEU][hapmap]
rs911008	0.83[ASW][hapmap]
rs9743502	0.95[EUR][1000 genomes]
rs9743793	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9806037	PPP2R3C	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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