Variant report

Variant	rs9809148
Chromosome Location	chr3:119477506-119477507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13316467	0.86[AFR][1000 genomes]
rs13316524	0.86[AFR][1000 genomes]
rs13318819	0.82[AFR][1000 genomes]
rs28370398	0.86[AFR][1000 genomes]
rs28415065	0.86[AFR][1000 genomes]
rs28464044	0.86[AFR][1000 genomes]
rs28484588	0.86[AFR][1000 genomes]
rs28595123	0.86[AFR][1000 genomes]
rs28678836	0.86[AFR][1000 genomes]
rs6795467	0.86[AFR][1000 genomes]
rs9289133	0.86[AFR][1000 genomes]
rs9810454	0.86[AFR][1000 genomes]
rs9811271	0.86[AFR][1000 genomes]
rs9814138	0.86[AFR][1000 genomes]
rs9815987	0.86[AFR][1000 genomes]
rs9817771	0.86[AFR][1000 genomes]
rs9819218	0.86[AFR][1000 genomes]
rs9820811	0.86[AFR][1000 genomes]
rs9824097	0.86[AFR][1000 genomes]
rs9835381	0.86[AFR][1000 genomes]
rs9837808	0.86[AFR][1000 genomes]
rs9842101	0.86[AFR][1000 genomes]
rs9851058	0.86[AFR][1000 genomes]
rs9853426	0.86[AFR][1000 genomes]
rs9858328	0.86[AFR][1000 genomes]
rs9860171	0.86[AFR][1000 genomes]
rs9864160	0.82[AFR][1000 genomes]
rs9865259	0.86[AFR][1000 genomes]
rs9866905	0.86[AFR][1000 genomes]
rs9870607	0.86[AFR][1000 genomes]
rs9875512	0.86[AFR][1000 genomes]
rs9881432	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119435400-119478200	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:119471000-119479400	Weak transcription	Brain Substantia Nigra	brain
3	chr3:119473000-119479400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:119473800-119484800	Weak transcription	Pancreas	Pancrea
5	chr3:119474400-119478200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:119474400-119478800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:119474400-119493400	Weak transcription	Ovary	ovary
8	chr3:119477400-119478800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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